DC900109

Overview
NameDC900109
Unique NameDC900109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7816 contig Csv1_Contig7816:155..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 56/233 (24.03%), Postives = 109/233 (46.78%), Query Frame = 3
Query:    6 PQHFPIFQSAALMEAEKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWK---WTHNGPPHCLQQ 653
            P   P    A+    + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+   +   +LL  +  Q+ ++ HD GH  V  +  +N +        L G   +WW    + H+  P+C ++
Sbjct:    3 PDPVPTPGPASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLVYLLHILLLDVAAWLTLWIFGT----SLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRK 231          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 60/212 (28.30%), Postives = 95/212 (44.81%), Query Frame = 3
Query:   72 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES+ W   ++ G+G         +L     Q+ ++ HD GH  V     +N I        L G S  WW   H
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESIAWFILSYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHIVHKFVIGHLKGASANWWNHRH 217          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 53/218 (24.31%), Postives = 105/218 (48.17%), Query Frame = 3
Query:   51 EKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWK---WTHNGPPHCLQQ 653
            + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+       +LL  +  Q+ ++ HD GH  V ++  +N +        L G   +WW    + H+  P+C ++
Sbjct:   18 QMRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGT----SLVPFTLCAVLLSTVQAQAGWLQHDFGHLSVFSTSTWNHLVHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRK 231          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 58/212 (27.36%), Postives = 94/212 (44.34%), Query Frame = 3
Query:   72 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES----VWAHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES    + ++ G+G         +L     Q+ ++ HD GH  V     +N +        L G S  WW   H
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHVVHKFVIGHLKGASANWWNHRH 217          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 49/194 (25.26%), Postives = 90/194 (46.39%), Query Frame = 3
Query:   72 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    +      W + + + ++L     Q   + HD GH  + T  ++N +AQ      L G S  WW + H
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRH 223          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 51/194 (26.29%), Postives = 89/194 (45.88%), Query Frame = 3
Query:   72 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDFEV-SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG-SGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            E++R H++  D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G        QD  + +++ +D+R L+       +F+      +  L  +  M V+    +      W     +  +L     QS  + HD GH  +     +N +AQ      L G S  WW + H
Sbjct:   26 EQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRH 219          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 49/194 (25.26%), Postives = 90/194 (46.39%), Query Frame = 3
Query:   72 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + + + +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    V      W + + + ++L     Q   + HD GH  +    ++N +AQ      L G S  WW + H
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHSAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLLVYLLGPGWVSSVLAALILAISQAQCWCLQHDLGHASIFPKSRWNHVAQQFVMGQLKGFSAHWWNFRH 223          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   57 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYIE 335
            K  T +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T     DK ++   ++ +E+  IS      Y+E
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMT-----DKHYS--LIKQYEIGYISSYEHPKYVE 98          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 3
Query:   42 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYI 332
            M +++K ++ EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   +DK F G      E+   S    R Y+
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIG------EIDSSSVPATRTYV 92          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FAD2L_HUMAN (Fatty acid desaturase 2-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 3
Query:   75 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGYFV------QDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSG----MLLGFL----WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH 626
            E++ HN   D  + I  KVY+V+ WA +HPGG   L + AG+D  D F A HP       YL  L  G         +  + S++ KD++ L+       MF          L    L FV ++   +    +  H GSG    M + FL       S+++ HD+GH  +    K+N +        L G+S   W + H
Sbjct:   63 EIQRHNHEADQLV-INCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAMHPELDIVQLYLKPLLIGELAPGEPSQERHKNSQLVKDFQELWSIAEAMNMFHAN-------LGFFFLHFVQILILEVLAWLIVYHFGSGWPVTMFISFLLTISQASSSFLQHDAGHLSIFRKSKWNHVVHKFVMCHLKGLSADRWNYWH 254          
The following BLAST results are available for this feature:
BLAST of DC900109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FADS1_MOUSE5.558e-1524.03Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 P... [more]
FADS2_RAT7.259e-1528.30Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS1_RAT9.481e-1524.31Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fa... [more]
FADS2_MOUSE1.617e-1427.36Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS3_MOUSE2.112e-1425.26Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 P... [more]
FADS3_HUMAN3.603e-1426.29Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
FADS3_RAT8.026e-1425.26Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fa... [more]
FAD5B_DICDI1.977e-1239.78Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
CYB51_ARATH3.372e-1239.80Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
FAD2L_HUMAN5.752e-1228.50Fatty acid desaturase 2-like protein OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionDC900109 VSS Citrus sinensis cDNA clone VS27V24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900109 ID=DC900109; Name=DC900109; organism=Citrus sinensis; type=EST; length=695bp
TTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCCTTAATGGAGGCC
GAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAGGCAGA
AGATTTGTGGATCTCTATACAGGGGAAAGTTTACGACGTTACAGAATGGG
CAAAACAACATCCTGGCGGCGACGTTCCGCTCTTGAATTTGGCTGGCCAA
GATGTAACCGATGCGTTTATAGCGTATCATCCAGGAACCGCTTGGCAATA
TCTTGATAAACTTTTTACAGGCTATTTTGTTCAAGATTTCGAAGTATCTG
AAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCCAAACAGGGT
ATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGTGTAGC
ATTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCTGTGAGAGCGTCT
GGGCTCATTTGGGTTCAGGCATGTTGTTGGGGTTTCTTTGGATTCAAAGT
GCTTATGTTGGTCACGATTCCGGGCATTATCAGGTTATGACAAGTCCTAA
GTTTAACAAAATTGCTCAGCTTATTTCAGGAAATTGTTTAACAGGAATCA
GCATTGCTTGGTGGAAGTGGACTCACAATGGCCCACCACATTGCTTGCAA
CAGCCTTGATTACGATCCAAATCTTCACACATCCCAGTTTTTGCG
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