DC900109

Overview
NameDC900109
Unique NameDC900109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7816 contig Csv1_Contig7816:155..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:   42 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTG 272
            M +EKK +  EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   ++K + G
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIG 78          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 3
Query:   42 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTG 272
            M  E K  T  E+  HN A+D W+ I GKVYDVT++   HPGGD  LL+  G+D TD F    H  +A   LD+ + G
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVG 78          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 3
Query:   57 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP 233
            K  +  EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHP 72          
BLAST of DC900109 vs. ExPASy Swiss-Prot
Match: FAD5C_DICDI (Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum GN=DDB_G0294553 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 3
Query:   54 KKYITAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYIEFAK 344
            KK  + +E+  HN  E+ +WISI G VYD+T++ K HPGG+  L+  AG+DVT+ F +YHP T             ++ +E+ ++S      Y+E +K
Sbjct:    9 KKLYSWKEISKHNTIENGIWISIDGLVYDITKFIKHHPGGEQVLILAAGRDVTNLFESYHPMTD-------LPSKMLKQYEIGQVSTMEFPKYVEKSK 99          
The following BLAST results are available for this feature:
BLAST of DC900109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CYB5_BRAOB1.674e-1144.87Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC2.855e-1144.87Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
FAD5A_DICDI4.869e-1149.15Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
FAD5C_DICDI8.306e-1136.73Probable Delta(5) fatty acid desaturase C OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionDC900109 VSS Citrus sinensis cDNA clone VS27V24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900109 ID=DC900109; Name=DC900109; organism=Citrus sinensis; type=EST; length=695bp
TTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCCTTAATGGAGGCC
GAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAGGCAGA
AGATTTGTGGATCTCTATACAGGGGAAAGTTTACGACGTTACAGAATGGG
CAAAACAACATCCTGGCGGCGACGTTCCGCTCTTGAATTTGGCTGGCCAA
GATGTAACCGATGCGTTTATAGCGTATCATCCAGGAACCGCTTGGCAATA
TCTTGATAAACTTTTTACAGGCTATTTTGTTCAAGATTTCGAAGTATCTG
AAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCCAAACAGGGT
ATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGTGTAGC
ATTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCTGTGAGAGCGTCT
GGGCTCATTTGGGTTCAGGCATGTTGTTGGGGTTTCTTTGGATTCAAAGT
GCTTATGTTGGTCACGATTCCGGGCATTATCAGGTTATGACAAGTCCTAA
GTTTAACAAAATTGCTCAGCTTATTTCAGGAAATTGTTTAACAGGAATCA
GCATTGCTTGGTGGAAGTGGACTCACAATGGCCCACCACATTGCTTGCAA
CAGCCTTGATTACGATCCAAATCTTCACACATCCCAGTTTTTGCG
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