DC900103

Overview
NameDC900103
Unique NameDC900103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8932 contig Csv1_Contig8932:41..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: HITA_NEIGO (Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  229 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLG 534
            IF KI  KEIP++ VYED +++ F+DI+P AP H+L+IPKV      L+ A   H  +LG+++     +AK  GL DGF+ +IN G  GGQ VFH+H+ ++G
Sbjct:    5 IFCKIAAKEIPAQTVYEDGEMVCFKDINPAAPLHLLLIPKVH--FDSLAHAAPEHQPLLGKMMLKVPEIAKASGLTDGFKTLINTGKGGGQEVFHLHIHIMG 104          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_BUCBP (Uncharacterized HIT-like protein bbp_327 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_327 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 44/108 (40.74%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  214 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLE-DGFRIVINDGPNGGQSVFHIHVXLLGGRQMN 534
            IF KII   IPSK++Y+D ++ AF DI+P AP HIL++P +   +  L++  E +  ILG +LY +  +AK+  ++ +G+R++IN   +G Q + H+H+ LLGG+++N
Sbjct:    5 IFQKIIKGIIPSKIIYQDKEITAFHDINPIAPIHILVVPNLL--IKSLNEINENNKHILGNMLYISIKIAKKFKIDKNGYRLIINCNQHGRQEIQHLHLHLLGGKKLN 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAI (Uncharacterized HIT-like protein BU357 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU357 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            +IF  II ++IP+ +VY+D K+ AF DI P+AP HILIIP     ++  +   +++  I+  + Y A  +AKQ+ + ++G+RI+IN    GGQ + ++H+ LLGG+++
Sbjct:    5 SIFKNIIQRKIPANIVYQDKKITAFEDIKPKAPVHILIIPNF--FISSSNDINKKNKWIMSHMFYIAVKIAKQKKINQEGYRIIINCNEYGGQEINYLHMHLLGGKKL 110          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: Y664_CHLMU (Uncharacterized HIT-like protein TC_0664 OS=Chlamydia muridarum GN=TC_0664 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = -3
Query:  226 MASXNEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGG 588
            M    E  V        TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK    +  L   +     +L       +L+A+  G+E+G+R+VIN+G  GGQSVFH+H+ LLGG
Sbjct:    1 MRRSTEFGVKTAGGSMTTIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDMQSDDFSLLSEAGKIIQLMARDFGIENGYRVVINNGLEGGQSVFHLHIHLLGG 119          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAP (Uncharacterized HIT-like protein BUsg_345 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_345 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = -3
Query:  217 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 534
            IF KII +E  + ++Y+D  V AF DI P+AP HI++IP +   +  L+   +++  I   +LY A  +AK + + EDG++IV+N   NGGQ + ++H+ LLGG ++
Sbjct:    7 IFQKIIKRETSTHIIYQDKIVTAFEDIAPKAPIHIIVIPNI--FIKTLNDINQKNKNIFAHMLYIAVKIAKNKKISEDGYKIVMNCNKNGGQEINYLHMHLLGGEKL 111          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_CHLTR (Uncharacterized HIT-like protein CT_385 OS=Chlamydia trachomatis GN=CT_385 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = -3
Query:  226 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGG 537
            TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK    +  L   +     +L       +L+A+  G+E+G+R+V+N+G  GGQSVFH+H+ LLGG
Sbjct:    3 TIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDIQGDDFLLLAEAGKIIQLMARNFGIENGYRVVVNNGLEGGQSVFHLHIHLLGG 104          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_RICPR (Uncharacterized HIT-like protein RP317 OS=Rickettsia prowazekii GN=RP317 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 41/114 (35.96%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  217 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPK-----VKDGLTGLSKAEERHCEILGRLLYXAKL--VAKQEGLED-GFRIVINDGPNGGQSVFHIHVXLLGGRQM 534
            +F KII K +P++++YED ++LAF+DI P AP HI++IPK       D ++  S  E +H        + +K+  +A + GL+  G+R++ N G   GQ++FH H  ++GG+++
Sbjct:    7 VFAKIITKNLPAEIIYEDKQILAFKDIAPIAPVHIIVIPKNEYIDYTDFISKASIDEIKH--------FFSKIADIANEAGLDKVGYRLITNKGEKSGQTIFHFHFHIIGGKKL 112          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_CHLPN (HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 OS=Chlamydia pneumoniae GN=CPn_0488 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 42/110 (38.18%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  217 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLV---AKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 537
            T+F +II+  I  + V+E++  +A +D  PQAP H+LIIPK       + + ++   + +  +    K+V   A + G+ DG+R+VIN+G  GGQ+VFH+H+ LLGGR +
Sbjct:    2 TVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPKKP-----IPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYRVVINNGAEGGQAVFHLHIHLLGGRPL 106          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: YHIT_AZOBR (Uncharacterized 13.2 kDa HIT-like protein in hisE 3'region OS=Azospirillum brasilense PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  217 DSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLLGGRQM 546
            D   +F +I+  EIP K V E +  LAF DI+PQAPTHIL+IPK          A     EI G      ++       E G+RI+ N G +  Q V H+H+ +  GR++
Sbjct:    6 DPNNVFARILRGEIPCKKVLETEHALAFHDINPQAPTHILVIPKGAYVDMDDFSARATEAEIAGLFRAVGEVARGAGAAEPGYRILSNCGEDANQEVPHLHIHVFAGRRL 115          
BLAST of DC900103 vs. ExPASy Swiss-Prot
Match: Y866_METJA (Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii GN=MJ0866 PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  232 IFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPK---------VKDGLTGLSKAEERHCEILGRLLYXAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVXLL 534
            IF KIIN EIP+KVVYED+ VLAF DI+P+   H L++PK           D L    K  ++  E+L +L +            DG+ IV N+G   GQ V H+H  ++
Sbjct:    3 IFCKIINGEIPAKVVYEDEHVLAFLDINPRNKGHTLVVPKKHYERFDEMPDDELCNFIKGVKKTVEVLKKLGF------------DGYNIVNNNGRVAGQEVNHVHFHII 100          
The following BLAST results are available for this feature:
BLAST of DC900103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HITA_NEIGO8.178e-2146.08Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4... [more]
YHIT_BUCBP2.909e-1840.74Uncharacterized HIT-like protein bbp_327 OS=Buchne... [more]
YHIT_BUCAI9.357e-1738.89Uncharacterized HIT-like protein BU357 OS=Buchnera... [more]
Y664_CHLMU9.357e-1738.02Uncharacterized HIT-like protein TC_0664 OS=Chlamy... [more]
YHIT_BUCAP2.084e-1639.25Uncharacterized HIT-like protein BUsg_345 OS=Buchn... [more]
YHIT_CHLTR1.351e-1540.38Uncharacterized HIT-like protein CT_385 OS=Chlamyd... [more]
YHIT_RICPR3.931e-1535.96Uncharacterized HIT-like protein RP317 OS=Ricketts... [more]
YHIT_CHLPN3.328e-1438.18HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 ... [more]
YHIT_AZOBR4.806e-1337.27Uncharacterized 13.2 kDa HIT-like protein in hisE ... [more]
Y866_METJA1.184e-1139.09Uncharacterized HIT-like protein MJ0866 OS=Methano... [more]

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Properties
Property NameValue
Genbank descriptionDC900103 VSS Citrus sinensis cDNA clone VS27V18 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900103 ID=DC900103; Name=DC900103; organism=Citrus sinensis; type=EST; length=668bp
CGACAAACCACACCCTTATTATTGAAGGTCTTTTTCTCCTTTCAGCACAA
TGTCATTTCACATCATATCAAATAATGNGGCTCAAAGCAGCCACCAATTA
GTTTGTTATTTGAAGCTCGATGCAGCTTGATGCATATTAAAGTNCAAAGG
GCATAATCATTTTTTCATAAGAGAATCTGGCNCCCAAAATACTTCATCTT
AGCCCGGGGGCCAGTTCATTTGTCGTCCTCCTAGGAGGNGGACGTGGATG
TGAAAAACTGATTGACCTCCATTTGGCCCATCATTAATCACAATCCTAAA
GCCGTCTTCTAGTCCTTCCTGTTTAGCAACAAGCTTAGCAGNGTAAAGAA
GGCGGCCAAGAATTTCGCAATGCCTTTCCTCGGCCTTTGAAAGTCCAGTC
AAGCCATCCTTCACTTTGGGAATAATTAGAATGTGTGTAGGAGCTTGGGG
ATCTATGTCCCTAAAGGCTAAGACCTTATCATCCTCATAAACAACTTTAG
ATGGGATTTCTTTGTTAATTATTTTGTCAAATATGGTAGGCGAATCAGAA
GGAACGGCTGCAACAGCAGCCTCGTTCTNTGAAGCCATGACGACGGCAGA
CAAATGAGACGTCAGCACTGCAAGTCGGCTGCTTGTGCTTGCTGCATTGC
CAACATCCGAGGCGGTGG
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