DC900097

Overview
NameDC900097
Unique NameDC900097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900097_ssr167 microsatellite DC900097_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC900097 vs. ExPASy Swiss-Prot
Match: YC5C_SCHPO (Uncharacterized protein C1259.12c OS=Schizosaccharomyces pombe GN=SPCC1259.12c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  294 HDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAYRN-FFTK 590
            HD   V+A+   P    +YY+EI +   G +G++ +GF  +S +  R PG  A S GYHG+ G  +     GEA+GP FTT D +G G+N+  R  F+TK
Sbjct:   96 HDAASVKADHAIPSNTSIYYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEFTTGDIIGCGVNFINRTIFYTK 195          
BLAST of DC900097 vs. ExPASy Swiss-Prot
Match: SPRY3_HUMAN (SPRY domain-containing protein 3 OS=Homo sapiens GN=SPRYD3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 3
Query:  297 DVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINY 566
            DVG+ QA  P   +   +YFE+ + D G K  IA+G   + +   R PGW   S  YH DDG ++ G G G+ FGP     D +G GI +
Sbjct:  244 DVGLAQARHPLSTRS--HYFEVEIVDPGEKCYIALGLARKDYPKNRHPGWSRGSVAYHADDGKIFHGSGVGDPFGPRCYKGDIMGCGIMF 331          

HSP 2 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  276 SVNLHGH--DVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGI 560
            +++ HG+  +VG   A++P  + +   YFE+ + D+G +G IA+G   + + +  QPGW  +S  YH DDG LY G+ KG  FG    + D +G GI
Sbjct:   55 TLSYHGNSGEVGCYVASRP--LTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGI 149          
BLAST of DC900097 vs. ExPASy Swiss-Prot
Match: SPRY3_PONAB (SPRY domain-containing protein 3 OS=Pongo abelii GN=SPRYD3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  276 SVNLHGH--DVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGI 560
            +++ HG+  +VG   A++P  + +   YFE+ + D+G +G IA+G   + + +  QPGW  +S  YH DDG LY G+ KG  FG    + D +G GI
Sbjct:   55 TLSYHGNSGEVGCYVASRP--LTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGI 149          

HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 3
Query:  297 DVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINY 566
            DVG+ QA  P   +   +YFE+ + D G K  IA+G   + +   R PGW   S  YH DDG ++ G G G+ F P     D +G GI +
Sbjct:  244 DVGLAQARHPLSTRS--HYFEVEIVDPGEKCYIALGLARKDYPKNRHPGWSRGSVAYHADDGKIFHGSGVGDPFEPRCYKGDIMGCGIMF 331          
The following BLAST results are available for this feature:
BLAST of DC900097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YC5C_SCHPO3.980e-1640.00Uncharacterized protein C1259.12c OS=Schizosacchar... [more]
SPRY3_HUMAN2.414e-1338.89SPRY domain-containing protein 3 OS=Homo sapiens G... [more]
SPRY3_PONAB3.153e-1337.11SPRY domain-containing protein 3 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionDC900097 VSS Citrus sinensis cDNA clone VS27V13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900097 ID=DC900097; Name=DC900097; organism=Citrus sinensis; type=EST; length=708bp
GAACTCTCCTGCTCATGTATGATTCTTTGAAACAAGTGTAGGGTTTCACT
TTATGCCAATTCCAAACAATGAGCACAAACAACACTAACAACATTAAAAA
TGAAGATCTCGGCTTGCACTTCCTCGCGCTGGCCCGGGCTTCTTCGAGCT
CGATGGGCGGAAAGCGGGAGGAGGAGGATTTTGAGGAAGAAGAGGTGCCG
ACGGAGCTGAACACGATCAACAGCTCTGGAGGGTTCCTGGTGGTTTCGCC
GGATAAGTTGTCGGTCAAGTACACTAGCGTCAATCTGCACGGCCATGATG
TCGGCGTCGTCCAAGCTAACAAGCCGGCTCCTGTTAAGCGGCTTGTTTAT
TACTTTGAGATTTACGTGGAGGACGCTGGTGCCAAGGGCCAGATTGCCAT
TGGATTTACCAGTGAGTCTTTCAAGATGCGGAGGCAACCAGGGTGGGAAG
CGAACAGTTGTGGATACCATGGGGATGATGGATTGCTTTATCGTGGACAA
GGAAAGGGAGAGGCCTTTGGCCCTACGTTTACAACTAATGATACTGTTGG
TGGTGGTATTAACTATGCTTACAGGAATTTTTTTACTAAATGGTCATTAG
TAGAGCAGNGTCAAGACTCAAGGTCCTTGTTCCACATTGCTGTTACAGCC
AACGAGAGGTCTGCACTCGGCAAAAAATTGTTTGTCTAGGGTCGAGCCAG
AAGGTGAG
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