DC900091 | Citrus Genome Database

Overview


Name	DC900091
Unique Name	DC900091
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1042

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4107	contig	Csv1_Contig4107:287..1325.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.860e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.860e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 4.581e-18
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    6 KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 4 Score: 72.7886 bits (177), Expect = 1.717e-15
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDK 54

HSP 5 Score: 31.5722 bits (70), Expect = 1.717e-15
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            ++T ADY +   S LHLVL LRGG
Sbjct:   53 DKTAADYKVLGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.429e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1

Query:  232 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 456
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 2 Score: 95.9005 bits (237), Expect = 4.143e-19
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2

Query:  689 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76

HSP 3 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 228
            +TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 4 Score: 72.4034 bits (176), Expect = 4.906e-12
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1

Query:  460 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D K
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK 54

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.067e-19
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 916
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG F
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGGNF 78

HSP 2 Score: 92.8189 bits (229), Expect = 3.508e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 3 Score: 89.7373 bits (221), Expect = 2.969e-17
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1

Query:   16 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    7 TLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 7.084e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D K
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDK 54

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 88.5817 bits (218), Expect = 6.615e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 1.077e-14
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54

HSP 5 Score: 33.113 bits (74), Expect = 1.077e-14
Identity = 16/24 (66.67%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            E+T ADY I   S LHLVL LRGG
Sbjct:   53 EKTAADYKILGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 88.5817 bits (218), Expect = 6.615e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 1.077e-14
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54

HSP 5 Score: 33.113 bits (74), Expect = 1.077e-14
Identity = 16/24 (66.67%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            E+T ADY I   S LHLVL LRGG
Sbjct:   53 EKTAADYKILGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 88.5817 bits (218), Expect = 6.615e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 1.077e-14
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54

HSP 5 Score: 33.113 bits (74), Expect = 1.077e-14
Identity = 16/24 (66.67%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            E+T ADY I   S LHLVL LRGG
Sbjct:   53 EKTAADYKILGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 88.5817 bits (218), Expect = 6.615e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 1.077e-14
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54

HSP 5 Score: 33.113 bits (74), Expect = 1.077e-14
Identity = 16/24 (66.67%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            E+T ADY I   S LHLVL LRGG
Sbjct:   53 EKTAADYKILGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 2.686e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 88.5817 bits (218), Expect = 6.615e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 4 Score: 68.5514 bits (166), Expect = 1.077e-14
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK 54

HSP 5 Score: 33.113 bits (74), Expect = 1.077e-14
Identity = 16/24 (66.67%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGG 682
            E+T ADY I   S LHLVL LRGG
Sbjct:   53 EKTAADYKILGGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.274e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 2.274e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 3 Score: 83.9593 bits (206), Expect = 1.629e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    6 KTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 4 Score: 65.4698 bits (158), Expect = 5.493e-13
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 609
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLAD 52

HSP 5 Score: 30.4166 bits (67), Expect = 5.493e-13
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  617 TLADYNIQKESTLHLVLRLRGG 682
            T   YN+++ S LHLVL LRGG
Sbjct:   55 TAKHYNLERGSVLHLVLALRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.969e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 456
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 2 Score: 88.9669 bits (219), Expect = 5.065e-17
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76

HSP 3 Score: 85.1149 bits (209), Expect = 7.314e-16
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 228
            +TLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 4 Score: 67.3958 bits (163), Expect = 2.503e-13
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDK 54

HSP 5 Score: 29.6462 bits (65), Expect = 2.503e-13
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGGM 685
            ++  ++Y+I+  S LHLVL LRGG+
Sbjct:   53 DKPASEYSIEGGSVLHLVLALRGGL 77

The following BLAST results are available for this feature:

BLAST of DC900091 vs. ExPASy Swiss-Prot

BLAST of DC900091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
NEDD8_CAEEL	1.860e-19	60.53	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ARATH	2.429e-19	61.33	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
RUB3_ORYSJ	7.067e-19	53.85	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
NEDD8_RAT	2.686e-18	56.58	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	2.686e-18	56.58	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	2.686e-18	56.58	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	2.686e-18	56.58	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	2.686e-18	56.58	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]
RUB3_ARATH	2.274e-17	55.26	NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DICDI	2.969e-17	53.25	NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900091 VSS Citrus sinensis cDNA clone VS27V07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900091 ID=DC900091; Name=DC900091; organism=Citrus sinensis; type=EST; length=1042bp
AATTCGGCACGAGAAACCCTAACCGGGAAGACGATAACCCTCGAGGTTGA
GAGCTCAGACACGATCGATAACGTTAAGGCGAAGATTCAAGACAAGGAGG
GAATCCCCCCGGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAA
GACGGCCGCACCTTGGCTGATTACAATATCCAGAAGGAGTCAACCCTTCA
TCTCGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAA
CTGGGAAGACGATCACTCTGGAGGTGGAGAGTTCGGATACGATTGATAAC
GTCAAGGCCAAGATCCAGGACAAAGAGGGGATACCGCCGGACCAGCAAAG
ATTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGCACCTTGGCCGATT
ACAACATTCAGAAAGAGTCAACTCTCCACCTTGTTCTTCGTCTCAGGGGA
GGCATGCAGATATTTGTTAAGACCCTTACTGGGAAAACAATTACTTTGGA
AGTTGAGAGCTCAGACACAATTGACAATGTCAAGGCAAAAATCCAAGACA
AGGAAGGAATTCCACCGGATCAGCAGCGTTTGATCTTCGCTGGCAAACAG
CTTGAGGATGGAAAGGACTCTTGCGGATTATAACATCCAGAAGGAGTCGA
CCCTTCATCTGGTTCTGCGCCTGAGGGGTGGTATGCAGATATTTGTCAAG
ACCTTGACTGGGAAGACTATTACTCTGGAGGTGGAGAGCTCAGATACTAT
TGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATC
AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTA
GCTGATTATAACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCT
TCGTGGTGGTGAATTCTAAGAATGTTATCTGCTTGCCGCCGTGTCTGTTC
TGCTCTGCTGTAGCAGTAATATTTATTTTTCATTTGCTAGTCCTGCTTCT
GTTTCAGTCTTTTTGTCACATCAAGTTTTATGTGGAAATGAA