DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.921e-63
Identity = 116/225 (51.56%), Postives = 160/225 (71.11%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + ++  A +    E+D E  V   +  + A++  +C EAGM A+R  R  ++ +DF K  R
Sbjct:  175 AVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYR 399          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.921e-63
Identity = 115/225 (51.11%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + ++  + +    E+D E  V   +  + A++  +C EAGM A+R  R  ++ +DF K  R
Sbjct:  170 AVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 394          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.394e-63
Identity = 116/240 (48.33%), Postives = 167/240 (69.58%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYN 722
            ++ELPL+  +L+ ++GI PP+GVLLYGPPGTGKT+L +A+A++  A F++V  S  + KY+GE  R++R++F  AR+  P I+F+DE+D+I  +RF   TSADRE+QR L+ELLNQ+DGFD    VK+IMATNR D +DPALLRPGRLDRKIE PLP+ + +  +     + ++ +  +D E++V   E  + AD+ ++C EAGM A+RA R  V   DF +A  K+ E    +  A YN
Sbjct:  149 TVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQ-PAFYN 387          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.096e-62
Identity = 117/235 (49.79%), Postives = 169/235 (71.91%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLES 707
            S+ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL R++F  A ++ P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATN+ + LDPAL+RPGR+DRKI    P+  ++ +IL IH + +    +++ E +V   +  +GAD++ +CTEAG+ A+R  R  V  EDF +A  ++ + K  E+
Sbjct:  197 SVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEEN 431          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.190e-62
Identity = 116/225 (51.56%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V   +  +GAD+ ++C E+GM A+R  R  V+ +DF KA +
Sbjct:  180 AVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 404          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.190e-62
Identity = 116/225 (51.56%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V   +  +GAD+ ++C E+GM A+R  R  V+ +DF KA +
Sbjct:  180 AVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 404          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.190e-62
Identity = 116/225 (51.56%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V   +  +GAD+ ++C E+GM A+R  R  V+ +DF KA +
Sbjct:  180 AVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 404          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.190e-62
Identity = 116/225 (51.56%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V   +  +GAD+ ++C E+GM A+R  R  V+ +DF KA +
Sbjct:  180 AVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 404          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.281e-62
Identity = 117/236 (49.58%), Postives = 164/236 (69.49%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 710
            ++E PL+NPE F  VG++PP GVLL+GPPGTGKT+LA+A+A+  DA+F+K+  S ++ K+IGE +RL+R++F  A    P IIF+DEIDA+  +R    TS D E+QRT+M+LL+++DGFD+ G +++I ATNR D+LD A+LRPGR DR IE+P PN  +R  IL+IHA  +     +D+  +      F+GA L ++ TEAGM AIR +RD V  +DF  A  KL      ESS
Sbjct:  167 AVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEGDTESS 402          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.857e-61
Identity = 113/232 (48.71%), Postives = 169/232 (72.84%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAK 695
            ++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  RL+R++F  A +H P I+F+DEIDAIG +R+   + A+REIQRT++ELLNQLDGFD   + +K+IMATNR   LDPAL+RPGR+DRKI    P+E ++ +I  IH + +    +++ E +++  +  +GA+++ + +EAG+ A+R  R  V+ +DF +A  K+ + K
Sbjct:  206 AVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTK 437          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PRS6B_SOLTU4.921e-6351.5626S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_ARATH4.921e-6351.1126S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_ENCCU8.394e-6348.3326S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS4_YEAST1.096e-6249.7926S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS6B_RAT3.190e-6251.5626S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA3.190e-6251.5626S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN3.190e-6251.5626S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN3.190e-6251.5626S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR1_HALSA9.281e-6249.58Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS4_SCHPO7.857e-6148.7126S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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