DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.187e-34
Identity = 88/213 (41.31%), Postives = 129/213 (60.56%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            PE+  ++G K  KG+LLYGPPG GKTLLAR I   ++A   KVV+   I++KY+GES   IR++F  A + Q          II  DEIDAI  +R S   S        + +LL+++DG +QL  + +I  TNRPD++D ALLRPGRL+ K+EI LP+E+ R++IL IH A +  H     ++D + +    + F+GA+L  +   A  +A+
Sbjct:  242 PEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH-DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 8.187e-34
Identity = 88/213 (41.31%), Postives = 129/213 (60.56%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            PE+  ++G K  KG+LLYGPPG GKTLLAR I   ++A   KVV+   I++KY+GES   IR++F  A + Q          II  DEIDAI  +R S   S        + +LL+++DG +QL  + +I  TNRPD++D ALLRPGRL+ K+EI LP+E+ R++IL IH A +  H     ++D + +    + F+GA+L  +   A  +A+
Sbjct:  242 PEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH-DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.187e-34
Identity = 88/213 (41.31%), Postives = 129/213 (60.56%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            PE+  ++G K  KG+LLYGPPG GKTLLAR I   ++A   KVV+   I++KY+GES   IR++F  A + Q          II  DEIDAI  +R S   S        + +LL+++DG +QL  + +I  TNRPD++D ALLRPGRL+ K+EI LP+E+ R++IL IH A +  H     ++D + +    + F+GA+L  +   A  +A+
Sbjct:  242 PEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH-DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.187e-34
Identity = 90/239 (37.66%), Postives = 140/239 (58.58%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG----IAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV--IHEDFMKAVRKLNEAK 695
            + LP   P++F   GI+ PPKGVLL+GPPGTGKT++ R +AS   A F  + +S++  K++GE  +L+R +F  AR   P +IF+DEID++   R      + R I+    E L QLDG +     ++++  ATNRP  LD A  R  R  +++ I LP  +SR +I++    G    I  H   + E + +L +G++GAD+R +CTEA M  IR   D +  I +D ++AV  ++ A+
Sbjct:  332 VVLPFKRPDVF--TGIRAPPKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQIVQNLLVGTRHDITNH---NLERIRELTDGYSGADMRQLCTEAAMGPIRDIGDDIETIDKDDIRAVTVMDFAE 560          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 100/287 (34.84%), Postives = 156/287 (54.36%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYA-RDHQPC-------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAI--------------RAERDYVIHEDFMKAVRKLNEA-----KKLESSAHYN-ADFGKE*KHLGKEPRILRQ 779
            L  P +  ++GI   KG+LLYGPPGTGKTL+AR I   ++A   K+V+   I++KY+G+S   +R++F  A R+++         II  DE+DAI  +R S G       Q  + +LL ++DG DQL  + +I  TNR D++D ALLRPGRL+  +EI LP+E  R++ILKIH + +A +G    ++D E +  L + F+GA++  +   A   A                 E   V   DF+ A+ ++  A     ++LES       +FGK  + +  E ++  Q
Sbjct:  290 LFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQ-VVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVRPAYGVSEEELESRVQGGIINFGKHIEEIITEGKLFVQ 575          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 93/235 (39.57%), Postives = 139/235 (59.15%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR--AERDYVIHEDFMKAVRKL 683
            PEL  ++GIK  KG+LLYGPPGTGKTL+AR I + ++A   K+V+   I+DKY+GES   IR +F  A + +          II  DEIDAI   R S   + +  +  T++ +LL ++DG +QL  + +I  TNR D++D ALLRPGRL+ ++EI LPNEQ R++IL IH   +        ++D   +    + F+GA+L  +   A  +A+    + D  +H D  +A+ KL
Sbjct:  247 PELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGS--VAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVD-PEAMEKL 478          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 89/259 (34.36%), Postives = 142/259 (54.83%), Query Frame = 3
Query:   15 PLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL-KIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER---------------DYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            P+M P++F   G++ PPKG+LL+GPPGTGKTL+ + IAS   A F  + +S++  K++GE  +++R +F  AR  QP +IF+DEID++  +R   G       +R   E L QLDG       ++ ++ ATNRP  +D A  R  RL +++ IPLP   +R +I+  + +       + + + VV+ ++GF+GAD+  +C EA +  IR+                  Y+  E+  K VR     K LE   ++N  FG
Sbjct:  429 PMMRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRSLHAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYENWNETFG 680          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 90/260 (34.62%), Postives = 150/260 (57.69%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IHAAGIAKHGEIDYEAVVKLAE---GFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDFMKAVRKLNEAKKLESSAHYNA 725
            +I +PL  P+LF  V   PP+GVLL+GPPGTGKTL+A++IAS   A F  +  S++  K++G++ +L++ +F  A  HQP IIF+DE+D++  +R     + +    R   E L  LDG     ++++++  ATNRP  LD A+ R  R  R++ +PLP  ++R +I++  IH     KH  +D   V++LAE   G++GAD+  +C  A M+ +R+            +   V  +DF +A+R ++++   E    + A
Sbjct:  265 AIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR---SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQ---VKH-NLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFEA 514          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.397e-33
Identity = 81/211 (38.39%), Postives = 128/211 (60.66%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 626
            +I++PL  PELF   G+K   G+L YGPPGTGKTLLA+A+A+N   NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG    G  + +I ATNRPD+LD ALLRPGR D+ + + + +  + +  IL+          ++  + +       + GAD   +C++A ++A+
Sbjct:  738 TIDMPLKFPELFAS-GMKKRSGILFYGPPGTGKTLLAKAVATNFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLAASCPFTYTGADFYALCSDAMLNAM 946          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.397e-33
Identity = 89/259 (34.36%), Postives = 141/259 (54.44%), Query Frame = 3
Query:   15 PLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI-LKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER---------------DYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            P++ P++F   G++ PPKG+LL+GPPGTGKTL+ + IA    A F  + +S++  K++GE  +++R +F  AR HQP +IF+DEID++  +R   G       +R   E L QLDG       ++ ++ ATNRP  +D A  R  RL +++ IPLP   +R +I + + +       E + EA+V  A+GF+GAD+  +C EA +  IR+ +                Y+  +     VR     K LE   ++N  FG
Sbjct:  401 PMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR---GEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDISTITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYENWNKTFG 652          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
NSF_MOUSE8.187e-3441.31Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN8.187e-3441.31Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR8.187e-3441.31Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
FIGL1_CAEEL8.187e-3437.66Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
SEC18_SCHPO1.069e-3334.84Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
NSF2_DROME1.069e-3339.57Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
FIGL1_MOUSE1.069e-3334.36Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
FIGL1_DROME1.069e-3334.62Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
PEX6_ASHGO1.397e-3338.39Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
FIGL1_XENLA1.397e-3334.36Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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