DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.634e-32
Identity = 87/263 (33.08%), Postives = 150/263 (57.03%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLNEA---KKLESSAHYNADFG 734
            LP + PELF   G++ P +G+LL+GPPG GKT+LA+A+A+  +A F  + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  +++ + LPNE++R+ +LK     + K G    + +   + ++  G++G+DL  +  +A +  IR            +E   +   DF ++++K+  +   + LE+   +N DFG
Sbjct:  358 LPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLK---NLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 610          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.634e-32
Identity = 85/228 (37.28%), Postives = 122/228 (53.51%), Query Frame = 3
Query:   24 NPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG---------FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 680
            NP  +    +   +GVLL GPPGTGKTL AR +A      F+    +   D     +A+ I EMF  AR + P  +F+DEIDAI GR   +    D   + T   L+ QLDG         F     V  I ATNRPD LD   +R GR+DR++ I LP+ + R++I  +H+AG     +ID+  +V    GF+GAD+RN+  EA + ++R  R Y+  +D +  + K
Sbjct:  514 NPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAK-INEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDK 736          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.492e-32
Identity = 88/264 (33.33%), Postives = 146/264 (55.30%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLA---EGFNGADLRNVCTEAGMSAIR------------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G  +  ++ ++ ATNRP  LD A LR  R  +++ + LP  Q+R  +L   +  + K G  +D EA+ +LA   +G++G+DL  +  +A +  IR                   E+D+    + +K +R+    + L S   ++ D+G
Sbjct:  512 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLL---SRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDF---HNSLKRIRRSVAPQSLNSYEKWSQDYG 765          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.492e-32
Identity = 87/263 (33.08%), Postives = 152/263 (57.79%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR-----AERDYVIHE-------DFMKAVRKLNEA---KKLESSAHYNADFG 734
            LP + PELF   G++ P +G+LL+GPPG GKT+LA+A+A   +A F  + ++ +  KY+GE  +L+R +F  AR+ QP IIF+DEID++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  ++I + LP E++R+++LK     ++KH     + +   + +L +G++G+DL ++  +A +  IR       R+   HE       DF+++++++  +   + L+    +N ++G
Sbjct:  313 LPALRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERREGEHDASRRLK---TEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLK---NLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRNMSAHEMRDIRISDFLESLKRIKRSVSPQTLDQYVRWNREYG 565          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.867e-32
Identity = 87/261 (33.33%), Postives = 146/261 (55.94%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D +A   + K+ +G++G+DL  +  +A +  IR                ++  +DF   +K +R+    + L S   +++D+G
Sbjct:  531 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAQQSLSSYEKWSSDYG 784          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.867e-32
Identity = 88/264 (33.33%), Postives = 146/264 (55.30%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLA---EGFNGADLRNVCTEAGMSAIR------------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G  +  ++ ++ ATNRP  LD A LR  R  +++ + LP  Q+R  +L   +  + K G  +D EA+ +LA   +G++G+DL  +  +A +  IR                   E+D+    + +K +R+    + L S   ++ D+G
Sbjct:  508 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLL---SRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDF---HNSLKRIRRSVAPQSLNSYEKWSQDYG 761          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.867e-32
Identity = 75/216 (34.72%), Postives = 133/216 (61.57%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK------IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++  P+  P+LF  + + P KG+LLYGPPGTGKTLLA+A+A+  +  F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R +         +R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP++++R  +++       +++G+    ++DY  +    +G++G+D+R VC EA M  +R
Sbjct:  273 AVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVR 485          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 88/261 (33.72%), Postives = 144/261 (55.17%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D EA   + K+ +G++G+DL     +A +  IR            +    +  +DF   +K +R+    + L S   ++ D+G
Sbjct:  501 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 754          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 87/261 (33.33%), Postives = 144/261 (55.17%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+ Q+R  +L      + K G  +D +A   + K+ EG++G+DL  +  +A +  IR            +    +  +DF   +K +R+    + L S   ++ D+G
Sbjct:  525 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLN---RLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYEKWSQDYG 778          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.707e-31
Identity = 76/216 (35.19%), Postives = 129/216 (59.72%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK------HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++  P+  P+LF  + + P KG+LLYGPPGTGKTLLA+A+A+     F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R +          R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP+ ++R  ++      ++K      H E++Y  + +  EG++G+D++ VC EA M  +R
Sbjct:  269 AVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVR 481          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SPAST_BOVIN2.634e-3233.08Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
FTSHC_ARATH2.634e-3237.28Cell division protease ftsH homolog 12, chloroplas... [more]
SPAST_DROVI4.492e-3233.33Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DANRE4.492e-3233.08Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
SPAST_DROPS5.867e-3233.33Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROMO5.867e-3233.33Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
KATL2_XENTR5.867e-3234.72Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SPAST_DROSI1.001e-3133.72Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
SPAST_DROGR1.001e-3133.33Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
KATL2_HUMAN1.707e-3135.19Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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