DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.107e-30
Identity = 86/245 (35.10%), Postives = 137/245 (55.92%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFS--EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAH 716
            P +  R+GIK  KG+LL+GPPGTGKTL+AR I   ++    K+V+   ++ K++GE+ + +R++F  A   Q          +I  DEIDAI   R S  +GT     I   + +LL ++DG + L  V +I  TNR D+LD ALLRPGRL+ ++EI LP+E  R++IL+IH   + ++     +I+ + +    + ++GA+L  V   A   A+  +   +  +D  K V + N    +E   H
Sbjct:  239 PHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSI---VNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQ---LSMDDLTKPVEEENIKITMEDFLH 477          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.887e-30
Identity = 76/216 (35.19%), Postives = 125/216 (57.87%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYAR--------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            ++ PEL  ++  K  KG+LLYGPPGTGKTL+AR ++  ++    K+V+   ++ KY+G S   IR +F  A         D    +I  DE+D++  +R S  +         + +LL+++DG DQL  + +I  TNR D++D ALLRPGR + +IEI LP+E+ R +I  IH   + ++G    +++++ +  L + F GA++  +C  A   AI
Sbjct:  296 ILPPELAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAI 511          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.887e-30
Identity = 82/204 (40.20%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------------DAN--FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI--------LKIHAAGIAKHG 533
            ++ELP ++ +LF    ++PPKGVLLYGPPG GKTL+A+A+A+++             DA   FL +    +++K++GE+ R IR +F  AR+      P I+F DE+D+I   R S G S+D E    + +LL+++DG + L  V +I A+NR D++DPA+LRPGRLD KI+I  P+ +S  +I        L I+A  +A+ G
Sbjct:  249 AVELPFLHKDLFHEYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTRGS-GVSSDVE-TTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIFSKYLVDGLPINADDLAEFG 450          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.465e-30
Identity = 74/185 (40.00%), Postives = 119/185 (64.32%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN-----FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI 497
            ++ELP ++ EL+    ++PPKGVLLYGPPG GKTL+A+A+A+++          DA      FL +    +++K++GE+ R IR +F  AR+      P I+F DE+D+I   R   GT    +++ T++ +LL+++DG + L  V +I A+NR D++DPA+LRPGRLD KI+I  P+ ++  +I
Sbjct:  267 AVELPFLHKELYREYALRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDI 448          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.172e-30
Identity = 84/263 (31.94%), Postives = 148/263 (56.27%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIH------------EDFMKAVRKLNEA---KKLESSAHYNADFG 734
            LP   PELF   G++ PPKG+LL+GPPG GKT+LA+A+A   ++ FL + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG     + ++++  ATNRP  LD A LR  R  +++ + LP+  +R+    ++LK H   ++   ++ Y  + +L EG++G+DL  +  +A +  IR      +             +DF+ +++K+  +   + L+    +N +FG
Sbjct:  392 LPTDRPELF--TGLRAPPKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEATRRLK---TEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALR--RFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSA-DKLKY--LARLTEGYSGSDLTALAKDAALGPIRELNPEQVRCVDPKKMRNISLQDFLDSLKKVRRSVTPQSLDFFDRWNREFG 644          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.172e-30
Identity = 83/218 (38.07%), Postives = 125/218 (57.34%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI------DYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP +NP LF  +  +P KG+LL+GPPG GKTLLA+A+A      F  + +S++  K++G+S + IR +F  AR+ QP IIF+DEID+I      E +  D E+ R +  E L Q DG       ++ +I ATNRP  LD A+LR  R  ++I + LP+E++R E++      + KH  +      D   +     GF+ +DL  +C EA M  IR
Sbjct:  254 AVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSI----LCERSEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELI---TKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIR 461          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.072e-29
Identity = 78/213 (36.62%), Postives = 131/213 (61.50%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + K+H  G  ++   E D+  + K  EG++GAD+  +  +A M  +R
Sbjct:  149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLH-LGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVR 354          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 77/214 (35.98%), Postives = 129/214 (60.28%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  V SS ++ K++GES +L++ +F  AR H+P IIF+DE+D++ G R    + A R I+    E L Q+ G        +++ ATN P VLD A+ R  R +++I IPLP E +R ++ ++H  G   H   + +   + +  EG++GAD+  +  ++ M  +R
Sbjct:  142 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLH-LGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVR 347          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 77/214 (35.98%), Postives = 129/214 (60.28%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  V SS ++ K++GES +L++ +F  AR H+P IIF+DE+D++ G R    + A R I+    E L Q+ G        +++ ATN P VLD A+ R  R +++I IPLP E +R ++ ++H  G   H   + +   + +  EG++GAD+  +  ++ M  +R
Sbjct:  142 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLH-LGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVR 347          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 77/214 (35.98%), Postives = 129/214 (60.28%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  V SS ++ K++GES +L++ +F  AR H+P IIF+DE+D++ G R    + A R I+    E L Q+ G        +++ ATN P VLD A+ R  R +++I IPLP E +R ++ ++H  G   H   + +   + +  EG++GAD+  +  ++ M  +R
Sbjct:  142 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLH-LGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVR 347          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
NSF_ARATH1.107e-3035.10Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
SEC18_CANAL1.887e-3035.19Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
MPA_RHOER1.887e-3040.20Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
MPA_MYCLE2.465e-3040.00Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
SPAST_IXOSC7.172e-3031.94Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_CAEEL7.172e-3038.07Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
VPS4B_BOVIN6.072e-2936.62Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT7.930e-2935.98Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE7.930e-2935.98Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN7.930e-2935.98Vacuolar protein sorting-associated protein 4A OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
back to top