DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28
Identity = 75/213 (35.21%), Postives = 119/213 (55.87%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            P +  ++GI   KG+LLYGPPGTGKTL+AR I + ++A   K+V+   I+ KY+G S   IR +F  A              II  DE+D++  +R S G          + +LL ++DG DQL  + +I  TNR D++D ALLRPGR + ++EI LP+E+ R++I  I    + ++     +++   +  L + F+GA++  +   A   AI
Sbjct:  263 PSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGVG-DNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAI 474          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28
Identity = 83/245 (33.88%), Postives = 128/245 (52.24%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------AERDY-------VIHEDFMKAVRKLNEAK 695
            ++ LP+    LF    + +PPKGVLLYGPPG GKTL+A+A A      F+ +  S + DK+ GES +L   +F  A   QP IIF+DEID+    R S    A   ++   M L + LD  D   +V ++ ATNRP  LD A++R  R+  +  I  P  + R  ILK+          +D   V +  +GF+G+DL+ +C +A +  +R      +E  +       V  +D  +A+ K+ ++K
Sbjct:  106 TVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLD-TDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28
Identity = 83/245 (33.88%), Postives = 128/245 (52.24%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------AERDY-------VIHEDFMKAVRKLNEAK 695
            ++ LP+    LF    + +PPKGVLLYGPPG GKTL+A+A A      F+ +  S + DK+ GES +L   +F  A   QP IIF+DEID+    R S    A   ++   M L + LD  D   +V ++ ATNRP  LD A++R  R+  +  I  P  + R  ILK+          +D   V +  +GF+G+DL+ +C +A +  +R      +E  +       V  +D  +A+ K+ ++K
Sbjct:  106 TVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLD-TDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28
Identity = 83/245 (33.88%), Postives = 128/245 (52.24%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------AERDY-------VIHEDFMKAVRKLNEAK 695
            ++ LP+    LF    + +PPKGVLLYGPPG GKTL+A+A A      F+ +  S + DK+ GES +L   +F  A   QP IIF+DEID+    R S    A   ++   M L + LD  D   +V ++ ATNRP  LD A++R  R+  +  I  P  + R  ILK+          +D   V +  +GF+G+DL+ +C +A +  +R      +E  +       V  +D  +A+ K+ ++K
Sbjct:  106 TVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLD-TDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.551e-27
Identity = 84/274 (30.66%), Postives = 146/274 (53.28%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG---------KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-----IDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIH-----------EDF---MKAVRKLNEAKKLESSAHYNADFGKE 740
            ++  P + P+LF  +  +P +G+LL+GPPGTGKT+LARA+A+   + F  + +S++  K++GES +L+R +F  A+   P IIF+DEID++   R S+G   +   +R   E L Q     +           +V ++ ATN P  +D A  R  R  R+  IPLP+E +R    ++H   + K+ +      D EA+VK  E ++G+DL  +  +A M  +R+  + ++            +DF   +K +R     + LE  + ++ +FG +
Sbjct:  474 AVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETS-RRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTR----RLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGESLLFTKMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEWDKEFGSQ 739          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.828e-25
Identity = 68/215 (31.63%), Postives = 119/215 (55.35%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK------IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++  P+  P+LF  + + P KG+LLYGPPGTGKTLLA+A+A+  +  F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R   GT                                  P  LD A+LR  RL+++I + LP++++R  +++       +++G+    ++DY  + +  +G++G+D+R VC EA M  +R
Sbjct:  273 AVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR---GTG---------------------------------PGELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTLGEETDGYSGSDIRLVCKEAAMRPVR 448          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.118e-25
Identity = 75/216 (34.72%), Postives = 117/216 (54.17%), Query Frame = 3
Query:   15 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG---------KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            P + PELF  +  +P +G+LL+GPPGTGKT+LARA+A+   A F  + +S++  KY+G+S +L+R +F  A+     +IF+DEID+I   R   G   +   +R   E L Q                 +V ++ ATN P  +D A  R  R  ++  IPLP +++R + L  H      H   E D E +V L EG++G+D+  +  +A M  +R
Sbjct:  398 PFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESS-RRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLS-HLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.021e-24
Identity = 77/246 (31.30%), Postives = 130/246 (52.85%), Query Frame = 3
Query:   60 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDFMKAVRKLNEA---KKLESSAHYNADFG 734
            P+ +LL+GP GTGKTLL R IAS + A F K+  S ++ K+IGE+ ++I   F  AR  QP +IF+ +ID +   + SE  S    + R   E L QLD        ++ +I AT++P+ +D +L R     +++ IPLP+  +R +I+      + +H     + ++  +V+  EGF+G D+ ++C EA +  + A            +   V ++DF  A  K+  +   K+L+    +N  FG
Sbjct:  519 PRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHS---PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII---VQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.310e-23
Identity = 75/246 (30.49%), Postives = 131/246 (53.25%), Query Frame = 3
Query:   60 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDFMKAVRKLNEA---KKLESSAHYNADFG 734
            P+ +LL+GP GTGKTLL R IAS + A F K+  S ++ K++GE+ ++I   F  AR  QP +IF+ +ID +   + +E  S    + R   E L QLD        ++ +I AT++P+ +D +L R     +++ IPLP+  +R +I+      +++H     + ++  +V+  EGF+G D+ ++C EA +  + A            +   V ++DF  A  K+  +   K+L+    +N  FG
Sbjct:  519 PRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHS---PVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII---VQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.235e-23
Identity = 63/213 (29.58%), Postives = 116/213 (54.46%), Query Frame = 3
Query:   60 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG-GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAK 695
            P+ VL +G PGTGKT+LA+++A+ +      + ++++I +++G+ AR I E++  A    P +IF+DE+DAIG  RRF    S   ++   +  LL ++DG +Q   V  I ATN P++LD A+    R + +IE  LP +  R  +L+ +   +    +   + +VKL +G +G D++    +  +    A+    +  + ++   K  + K
Sbjct:  157 PRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQ---SLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIEYALKERDLK 364          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SEC18_YEAST6.713e-2835.21Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
ATAD1_RAT6.713e-2833.88ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE6.713e-2833.88ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN6.713e-2833.88ATPase family AAA domain-containing protein 1 OS=H... [more]
YKX4_SCHPO2.551e-2730.66Uncharacterized AAA domain-containing protein C328... [more]
KATL2_XENLA1.828e-2531.63Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SUR2_SCHPO3.118e-2534.72Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
FIGN_MOUSE2.021e-2431.30Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
FIGN_HUMAN1.310e-2330.49Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
PRS2_METTM2.235e-2329.58Putative 26S protease regulatory subunit homolog M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
back to top