DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.109e-22
Identity = 74/261 (28.35%), Postives = 140/261 (53.64%), Query Frame = 3
Query:   15 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH----GEIDYEAVVKLAEGFNGADLRNVCTEA------GM------SAIRAERDYVIHEDFMKAVRKLNEA---KKLESSAHYNADFG 734
            P++ P++F  +   P + +LL+GP GTG+TLL R +AS + A FL +  SA++ K++GE  ++++  F  AR  QP ++F+ ++D +   + SE    +  + R   ELL QLDG        V ++ +T++P+ +D +L R     +++ +PLP+  +R +I+   +  +++H     + +   +V+  +GF+G D+  +C EA      GM        I  +   V ++DF     K+  +   K+L++   +N  FG
Sbjct:  483 PILRPDMFSGLATLP-RSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLSE----ESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQII---SQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGADLSGMIPGQMRPVSYQDFENVFCKIQPSISQKELDTYTEWNKMFG 733          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.227e-22
Identity = 60/193 (31.09%), Postives = 110/193 (56.99%), Query Frame = 3
Query:   60 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG-GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAE 635
            P+ VL +G PGTGKT+LA+++A+ +      + ++++I +++G+ AR I E++  A    P +IF+DE+DAIG  RR+    S   ++   +  LL ++DG +Q   V  I ATN P++LD A+    R + +IE  LP+++ R  +L+ +   +    +   + +VKL    +G D+++   +  +    AE
Sbjct:  157 PRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQ---SLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIKDRVLKTALHRAIAE 344          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 72/257 (28.02%), Postives = 124/257 (48.25%), Query Frame = 3
Query:   36 FLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAIIDKYIGESARLIREMFGYARD--------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK----HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA-------------ERDYVIHEDFMKAVRKLNEAKKLESSAHYN 722
            +L  G++P KG++L+GPPGTGKT L+R +   +      F  +    I +K++G S   IR +F  A+D            ++ +DEIDA+   R   G+  +      + + L ++DG +    +  I  TNR ++LDPA +R GR    I+I LP+++ R++I +IH   + +      ++D   +  + E F+GAD+  +   A + ++                   V  EDF KA +++N  K    S   N
Sbjct:  595 YLARGLRPVKGIILHGPPGTGKTSLSRNLGKILGCEGDRFRLMSGPEIFNKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDDVINTHGLVTFEDFTKAAKEINHNKNKSDSTKDN 849          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 69/223 (30.94%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   48 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESS 710
            G+  P+G+LL G  GTGK+L A+AIA+      LK+    +    +GES   +R+M   A    PCI+++DE+D       S G S      R L   ++ L   ++   V ++   N  D+L   ++R GR D    + LP  + R EI KIH      +     DY+ + +L+E F+GA++R    EA   A   +R++   +D   A+++L    +LE+S
Sbjct:  255 GLPTPRGLLLIGIQGTGKSLTAKAIATEWQLPLLKLDVGRLFGGIVGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTS--NRVLATFISWLS--EKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEAMYQAFDQQREFTT-DDICLALKQLIPLAQLENS 472          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_HELSJ (Cell division protease ftsH homolog OS=Helicosporidium sp. subsp. Simulium jonesii GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.092e-21
Identity = 67/228 (29.39%), Postives = 107/228 (46.93%), Query Frame = 3
Query:   63 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSEGTSADREIQR--------------------------------TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            K +LL GPPGTGKTLL RAIA   D   ++ +    S     + + E  +L  + F YA+   PCI+F DE+D++    GG  F E   A+  +                                  TL++LL + +       + +I ATNR + +DPA++RPGR        LPN   R++  K +AAG++   EI ++ + K   GF+ +D+  +  E+ +  +
Sbjct:  815 KPILLVGPPGTGKTLLVRAIAGEADIPVIQFIVNKDSPGFTRELVPEYEKL-SKAFEYAKSIAPCILFFDEMDSLAPKRGGGYFGENAWAEIRLNNNILPYEFSPLKAPEPQKNKMDKFKTKKVKPRGTLLQLLYECNNLSNEKPILLIGATNRQNEIDPAVIRPGRFSTIYNFSLPNSSERIDFCKFYAAGLSMDKEIPWDYIAKRTVGFSPSDISMLMKESSLYGV 1041          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 77/253 (30.43%), Postives = 128/253 (50.59%), Query Frame = 3
Query:   60 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS---------------EGTSAD---REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE---GFNGADLR----NVCTEAGMSAIRAERDY-VIHED-FMKAVRKLNEAKKLESSAHYNADFGK 737
            P G L  GPPGTGKTL+A+A++   +  +L V  S    +  G +   + ++F   ++  PCI+++DEID+I  RR                 EG++ +   +     LM+ L  +DG+ +   + +I ATNR + LD A++RPGR DR+I    P  + R +IL+I          +D      +AE   G NG DLR    N+   + + +   ++   VI+ED F +A+ +++  + + S  +Y   FGK
Sbjct:  378 PMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRN--TKALVDDTTKTMMAERSIGLNGCDLRLLADNILLLSALESRNQQKTIPVINEDTFDRALERVSRIRHIIS--NYELAFGK 626          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.771e-20
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  315 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA----------KKLESSAHYNA 725
            E ++TL ++L ++DGF     V +I ATNRPDVLDPAL RPGR DR++ + LP+ + R +ILK+H   ++   ++D   + +   G++GADL N+  EA + A R  +  V   +F KA  K+N            K+ ES+A++ A
Sbjct:   15 EREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTDKQKESTAYHEA 161          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 3
Query:   48 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEID-AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEG--FNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            G+  PKG+LL G  GTGK+L A++IA+  +   LK+    +    IGES   +R+M  +A    PCI+++DEID A  G  F+  +   + +  T +  L+     ++   V ++   N  D L P LLR GR D    I LP+ + R  I K+H   I       Y+  +  A+   F+GA++     EA   A    R++    D + +++++
Sbjct:  271 GLPIPKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLS-----EKKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNENREFTT-SDILNSLKRV 479          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YCF46_PORYE (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra yezoensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 67/217 (30.88%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   39 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 680
            L  GI  PKG+LL G  GTGK+L A+AIAS+     L++    +    +GES   +REM   +    PCI+++DEID       S+G S     +  T +  L+     ++   V ++   N+   L   +LR GR D    + LPN Q R  I KIH + +      + D   +  L   F+GA++     E+  +A   ER++   ED   A+++
Sbjct:  252 LNYGIPSPKGLLLVGIQGTGKSLTAKAIASDWMLPLLRLDMGKLFGGLVGESESKMREMINISEGLSPCILWIDEIDKAFSGLHSQGDSGTSARVFGTFITWLS-----EKKAPVFVVATANKIQSLPSEMLRKGRFDEIFFLDLPNRQERESIFKIHLSKVRPRSWQKYDIHELSLLCNKFSGAEIEQAIIESMHTAFSEEREFST-EDIKIAIKQ 462          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL2_HUMAN (Putative fidgetin-like protein 2 OS=Homo sapiens GN=FIGNL2 PE=5 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 71/248 (28.63%), Postives = 125/248 (50.40%), Query Frame = 3
Query:   15 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTE----AGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            PL+ P  +    ++PP+ VLL+GP G GK LL R +A+ + A  L++  + +      E ARL++  F  AR   P ++ + E++A+   R  +G +A   +Q  L+  L+   G    G V ++  T+RP  LD A  R  R   +  + LP+  +R +IL+     +A+ G    E +  A+V+  +GF+G +L  +C +    AG+  ++    Y   E  +  V     AK+L+S   ++  +G
Sbjct:  411 PLLRPPAYPG-SLRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPSVLLISELEALLPAR-DDGAAAGGALQVPLLACLDGGCGAGADG-VLVVGTTSRPAALDEATRR--RFSLRFYVALPDSPARGQILQ---RALAQQGCALSERELAALVQGTQGFSGGELGQLCQQAAAGAGLPGLQRPLSYKDLEAALAKVGPRASAKELDSFVEWDKMYG 650          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FIGN_DANRE1.109e-2228.35Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
PRS2_METTH3.227e-2231.09Putative 26S protease regulatory subunit homolog M... [more]
YR476_MIMIV9.389e-2228.02Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
YCF46_ODOSI9.389e-2230.94Uncharacterized AAA domain-containing protein ycf4... [more]
FTSH_HELSJ2.092e-2129.39Cell division protease ftsH homolog OS=Helicospori... [more]
YCF2_MESVI7.948e-2130.43Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
FTSH2_HAEIN1.771e-2038.10Cell division protease ftsH homolog 2 OS=Haemophil... [more]
YCF46_GUITH2.557e-1930.23Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_PORYE3.339e-1930.88Uncharacterized AAA domain-containing protein ycf4... [more]
FIGL2_HUMAN2.165e-1828.63Putative fidgetin-like protein 2 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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