CN185914

Overview
NameCN185914
Unique NameCN185914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig305 contig Csv1_Contig305:402..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185914 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -2
Query:  429 AATVDVQASSVEPKIISVQPSCASELSESVEAKPKEG-----PSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDK 725
            A+T D+    + P   +  PS   +  E+  A          P+RC +C+K+VGL GF+CRCG  +C +HR++DKH C FD++ + R+ I K NP+I A K+ K
Sbjct:  121 ASTTDITVP-IAPATTAPTPSLKGKEEEATAAASSSAAAAAKPNRCVACRKKVGLLGFECRCGGTFCSTHRHADKHACTFDFKKSDREKIAKENPLIVAPKITK 223          
BLAST of CN185914 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  426 SCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 599
            +CKK+VGL GF CRCG+L+  SHRY ++H+CP DY++AA D + K NPV+K +KL ++
Sbjct:   68 ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125          
BLAST of CN185914 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  426 KEGPSRCSSCKKRVGL-TGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 623
            K+  + C  C K+ GL + ++CRCGN +C SHRY++ H C +DY++A R  + +ANPV+ A KL KI
Sbjct:  661 KKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
BLAST of CN185914 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  426 SRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAIIKANPVIKAEKLDKI 611
            +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI + NP++ A K++KI
Sbjct:   97 NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIARHNPLVVAPKINKI 152          
The following BLAST results are available for this feature:
BLAST of CN185914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP12_ORYSJ3.159e-1638.46Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ARATH5.957e-1555.17Putative zinc finger A20 and AN1 domain-containing... [more]
ANUB1_HUMAN9.511e-1346.27AN1-type zinc finger and ubiquitin domain-containi... [more]
SAP10_ORYSJ1.052e-1146.77Zinc finger A20 and AN1 domain-containing stress-a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185914 ID=CN185914; Name=CN185914; organism=Citrus sinensis; type=EST; length=726bp
AGTTAAAGCCGATAGAAACCATAATTAAAAATTTACAGAGGCTAAGCGCA
AGAATTGTCCATGTATGTTTTCCACATCATATGGAAATAGCACAACCATC
TTTTTCTGAATTTTTTTTTTTAAGCAGAAACTAATAAAGTGAAATGCCAT
ATGAAACATAATGACAAATTGGAAAGCTATCCAAAAGTCCATAAAACCAG
AGCACAGATTCACTCTTAAACACTGAAGCCAACATATAAGTTCTCGCCAA
CACACGACATAGAGTTCTTCATACTGCAGAGATGTCCTATAACTGATAAT
GGGCCCCCAGCATATATAACATTAAAGGACACCTGATAAGATACGTGGCC
TTCTCAGAAGAAGCCTCTAACAGATGAGCAAGATCATCATTCTTTGATTA
TTGAAACCTCATCCCATTGAATCTAGATTTTATCTAGCTTCTCAGCCTTG
ATCACAGGGTTTGCTTTAATTATAGCATCCCTAGCAGCAGTGCGGTAGTC
AAAGGGGCAGTTATGTTTGTCCGAATAGCGATGTGACACACAGTATAAGT
TACCACAGCGACATTTGAATCCTGTTAAACCAACACGCTTCTTGCAACTG
CTGCACCGGCTGGGACCCTCCTTCGGCTTTGCCTCCACACTCTCGCTCAA
TTCTGAAGCACATGATGGCTGCACAGAGATGATTTTTGGCTCCACTGAAC
TAGCTTGCACATCAACAGTGGCAGCA
back to top