CN185912

Overview
NameCN185912
Unique NameCN185912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185912_ssr99 microsatellite CN185912_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K+FS++G  L+ L +MS +EL+K+  ARARR   R +      L++KL         G+  + ++TH+R++II+P  +G I+ VYNG ++++ EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLE--------GDYDD-IKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  142 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   30 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            +P++R  ++F++RG  +  L  M+  EL+ L  ARARR+F RGL R+   L+  LR            E +RTHLR+MII+PEM+G  I ++NGK F +VEI+PE + HYL EF+++ + V HG  GIGAT SS+++PLK
Sbjct:    9 MPRRR--EEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 62/136 (45.59%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  139 KFSFRGVDLDALLDMSNDELVKLFSARARRR----FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            KF++RG  L+ L  M  ++L ++  AR RR     F++G   + + L++K+R+A + A  G+K   ++THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYL EF+++ K V+HG PG+ AT SS F+ LK
Sbjct:    6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  139 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  139 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 66/131 (50.38%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  142 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            F +RG  L+ LL++  DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.335e-27
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  139 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP-EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            +F++RG  LD L  MS +++  L  AR RR  +RGL  +     +KLR+  R+A P +   +P+RTHLR+M I+P  +   I VYNG++F +V I+PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQ----QKLRETVRDADPQKTANDPIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K+FS+RG  L+ L +M  +EL+ L  ARARR + R +  +   L +KL         G+K E ++TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYL EF+++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 67/134 (50.00%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  133 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            +K F +RG   D L+ M  +E +KL  AR RR  +RGL+     L++K+RKAK  A  G K  PVRTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT S+  I  K
Sbjct:   55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187          
The following BLAST results are available for this feature:
BLAST of CN185912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_THEVO5.991e-2845.8630S ribosomal protein S19P OS=Thermoplasma volcani... [more]
RS19_PYRAR5.991e-2851.1530S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_METMJ7.825e-2845.7130S ribosomal protein S19P OS=Methanoculleus maris... [more]
RS19_THEPD1.022e-2745.5930S ribosomal protein S19P OS=Thermofilum pendens ... [more]
RS19_HALSA1.022e-2744.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS31.022e-2744.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_THENV1.335e-2750.3830S ribosomal protein S19P OS=Thermoproteus neutro... [more]
RS19_HALWD1.335e-2747.3730S ribosomal protein S19P OS=Haloquadratum walsby... [more]
RS19_PICTO2.973e-2745.8630S ribosomal protein S19P OS=Picrophilus torridus... [more]
RS19_CALMQ2.973e-2750.0030S ribosomal protein S19P OS=Caldivirga maquiling... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185912 ID=CN185912; Name=CN185912; organism=Citrus sinensis; type=EST; length=714bp
CCTATCAGATCCAGCGGGAGCCTCTCTTCACACTCGCAGTCGTTTATCTC
ACCAGTCCCAGCTCTAACCATGGCGGATGGCGATGCTGATGTTGCGGTGG
CGGCGGCGGCAGGACTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTC
AGAGGCGTGGATTTGGACGCTCTTCTTGATATGTCCAATGATGAGCTCGT
CAAGCTCTTCAGTGCACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGA
GGAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGCT
CCACCTGGTGAGAAGCCCGAACCAGTTCGCACCCATTTGCGAAACATGAT
CATTGTTCCTGAAATGATTGGAAGCATTATTGGAGTGTACAATGGCAAGA
CCTTTAATCAGGTTGAAATCAAGCCGGAAATGATTGGGCATTACCTGGCT
GAGTTCTCTATCTCATACAAGCCTGTGAAGCATGGTAGACCTGGTATTGG
TGCTACCCATTCCTCAAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGA
TATCTGGATATTTAGCTTATTGTTATTTTCAGAAAACATCGAAGTTGATC
AAATTTTTTGTGGTTACTTTTTTTTTTTTTGTTGTTGGACTAAATACTAG
CGTTTCAGTTGTTAATCTAGATAATGGAACTAATGTGTAGTTTAAAGAGG
TGTTATGTGGCTTG
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