CN185912

Overview
NameCN185912
Unique NameCN185912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185912_ssr99 microsatellite CN185912_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  142 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAK+    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+I+ K V+HG PG+ AT SS  I  K
Sbjct:   31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPGLKATRSSLHIAAK 160          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  142 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K+RKAKR    G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ + V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 62/133 (46.62%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            ++F +RG  L+ L  M+ DEL  +  +R RR  +RGL  +   L+ K+RK K         + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG GAT SS+F+PLK
Sbjct:    4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 60/133 (45.11%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            + F +RG  L+ L  M  +EL KL  AR RR+ +RG   +   L++KLRK              RTH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH L EF+++ +  KH  PG+GAT SS+++PLK
Sbjct:   11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLRKKGT----------ARTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPGVGATRSSKYVPLK 133          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.651e-27
Identity = 61/133 (45.86%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K+F+++G  L+ L  MS +EL+K+  ARARR   R    +   L++KL   +         E V+TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.476e-26
Identity = 58/139 (41.73%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L  L +M   + +++  AR RR  ++G+  K   L+ K++KA+R A  G+ P  +RTH R+ +I PEMIG   G+YNGK F +V++  E IG +L EF+ S K V+HG PG+GAT  S F+P+K
Sbjct:   26 PRRRV--EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPGMGATRGSMFVPIK 162          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K F FRG  L+ L +MS DE+++L  +R RR  +RG   +   ++ K+ K K       +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            KKF +RG   + L  M  D L +LF++R RR   RG+      LI++++ A+     G++  P++THLR++I++P M G  + V++GK F  VEI  EMIGHYL E+ I+ K V HG PG+GA+ SS ++PLK
Sbjct:    3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 60/140 (42.86%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            LPK++  ++F++RG  +  L  M  +E+ +L  +R RR  +RGL ++    + KLR A+  A         +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRK--EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTA---------KTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 56/133 (42.11%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI++++ AK     G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
The following BLAST results are available for this feature:
BLAST of CN185912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PYRIL3.883e-2750.3830S ribosomal protein S19P OS=Pyrobaculum islandic... [more]
RS19_PYRCJ5.072e-2749.6230S ribosomal protein S19P OS=Pyrobaculum calidifo... [more]
RS19_KORCO5.072e-2746.6230S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_ARCFU5.072e-2745.1130S ribosomal protein S19P OS=Archaeoglobus fulgid... [more]
RS19_THEAC8.651e-2745.8630S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_META31.476e-2641.7330S ribosomal protein S19P OS=Methanococcus aeolic... [more]
RS19_METST1.927e-2643.6130S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_CENSY1.927e-2643.6130S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_METTP9.565e-2642.8630S ribosomal protein S19P OS=Methanosaeta thermop... [more]
RS19_NITMS1.249e-2542.1130S ribosomal protein S19P OS=Nitrosopumilus marit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185912 ID=CN185912; Name=CN185912; organism=Citrus sinensis; type=EST; length=714bp
CCTATCAGATCCAGCGGGAGCCTCTCTTCACACTCGCAGTCGTTTATCTC
ACCAGTCCCAGCTCTAACCATGGCGGATGGCGATGCTGATGTTGCGGTGG
CGGCGGCGGCAGGACTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTC
AGAGGCGTGGATTTGGACGCTCTTCTTGATATGTCCAATGATGAGCTCGT
CAAGCTCTTCAGTGCACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGA
GGAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGCT
CCACCTGGTGAGAAGCCCGAACCAGTTCGCACCCATTTGCGAAACATGAT
CATTGTTCCTGAAATGATTGGAAGCATTATTGGAGTGTACAATGGCAAGA
CCTTTAATCAGGTTGAAATCAAGCCGGAAATGATTGGGCATTACCTGGCT
GAGTTCTCTATCTCATACAAGCCTGTGAAGCATGGTAGACCTGGTATTGG
TGCTACCCATTCCTCAAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGA
TATCTGGATATTTAGCTTATTGTTATTTTCAGAAAACATCGAAGTTGATC
AAATTTTTTGTGGTTACTTTTTTTTTTTTTGTTGTTGGACTAAATACTAG
CGTTTCAGTTGTTAATCTAGATAATGGAACTAATGTGTAGTTTAAAGAGG
TGTTATGTGGCTTG
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