CN185912

Overview
NameCN185912
Unique NameCN185912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185912_ssr99 microsatellite CN185912_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            K+F ++G  L  L  MS +EL K+  AR RR   R LK       KKL K    A  G+  +P++TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYL EFS + K  KH  PGIGAT SS  +  K
Sbjct:    8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            LPK++   +++FRG  +  L +MS ++  +L  A+ RR  +RG       ++++ R  K         E VRTH RNMII PEMIG  + VYNGK F ++EI PEMIGH   E+S +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 52/139 (37.41%), Postives = 84/139 (60.43%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = 1
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L  L +M   + +++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            LP+++  ++F++ G  +D L  MS ++L+ +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  GIGAT SS+F+PLK
Sbjct:    9 LPRRK--EEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 53/140 (37.86%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I ++NGK F  V+++PEM+GH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CN185912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NANEQ3.635e-2548.1230S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]
RS19_METBU6.200e-2543.5730S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_METM72.356e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM55.248e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METMP8.953e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM68.953e-2437.4130S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS1.994e-2336.6930S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METHJ2.605e-2341.4330S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMA1.688e-2240.0030S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC4.912e-2237.8630S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185912 ID=CN185912; Name=CN185912; organism=Citrus sinensis; type=EST; length=714bp
CCTATCAGATCCAGCGGGAGCCTCTCTTCACACTCGCAGTCGTTTATCTC
ACCAGTCCCAGCTCTAACCATGGCGGATGGCGATGCTGATGTTGCGGTGG
CGGCGGCGGCAGGACTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTC
AGAGGCGTGGATTTGGACGCTCTTCTTGATATGTCCAATGATGAGCTCGT
CAAGCTCTTCAGTGCACGTGCGCGCAGAAGGTTTCAGAGGGGTTTAAAGA
GGAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAGGCGAAAAGGGAGGCT
CCACCTGGTGAGAAGCCCGAACCAGTTCGCACCCATTTGCGAAACATGAT
CATTGTTCCTGAAATGATTGGAAGCATTATTGGAGTGTACAATGGCAAGA
CCTTTAATCAGGTTGAAATCAAGCCGGAAATGATTGGGCATTACCTGGCT
GAGTTCTCTATCTCATACAAGCCTGTGAAGCATGGTAGACCTGGTATTGG
TGCTACCCATTCCTCAAGGTTCATTCCTCTTAAGTGAGATGTATGCTGGA
TATCTGGATATTTAGCTTATTGTTATTTTCAGAAAACATCGAAGTTGATC
AAATTTTTTGTGGTTACTTTTTTTTTTTTTGTTGTTGGACTAAATACTAG
CGTTTCAGTTGTTAATCTAGATAATGGAACTAATGTGTAGTTTAAAGAGG
TGTTATGTGGCTTG
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