CN185912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22 Identity = 54/140 (38.57%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ + ++ K+ VRTH R++II+PEMIG I ++NGK F V+++PEMIGH EF+ + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------VRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22 Identity = 50/140 (35.71%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LPK++ ++F++RG+ + + + +++ L AR RR+ +R + L+ ++ + + ++THLR+MII+PEM+G ++NGK + VE PEM+GHYL EF+++ V HG GIGAT S+++PLK Sbjct: 12 LPKRK--EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22 Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 +PK+R +++++ G +++ L MS DEL+ + + ARR+ RG R + K+ + + VRTH R+MII+PEM+G + +Y+GK F VEI E + HY EF+++ K V HG GIGAT SS+++PLK Sbjct: 9 MPKRR--EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIAEG----------DGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAGIGATKSSKYVPLK 136 The following BLAST results are available for this feature:
BLAST of CN185912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185912 ID=CN185912; Name=CN185912; organism=Citrus sinensis; type=EST; length=714bpback to top |