CN185911

Overview
NameCN185911
Unique NameCN185911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185911_ssr665 microsatellite CN185911_ssr665:665..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.638e-29
Identity = 61/134 (45.52%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  241 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 642
            +KKF +RG  L+ LL+M  D+ +KL  AR RR  ++G       LI+K+RK +R++   +  +P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG+ AT SS F+ +K
Sbjct:    9 WKKFRYRGKSLEELLNMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.648e-29
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = -1
Query:  241 RTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 648
            R  K+F++RG  LD L +M  DE+ +L  AR RR   RGL  +   L++K+R   +E        P+RTHLR+M I+PE +G    VYNG +F +V+++PEMIGH+L EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:    9 REGKEFAYRGHSLDELQEMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  241 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 642
            +K F +RG  +D LL+M  DE +KL  +R RR  +RG       L++K+RK +RE   G+  + ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:    9 WKNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  241 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 642
            +KKF +RG  L+ LL M  D+ +KL  AR RR   RGL      L+ K+RKA+++   G+K   V+TH+R+MII+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + K V+HG PG+ AT S+  + LK
Sbjct:   12 WKKFRYRGYTLEELLAMPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 62/132 (46.97%), Postives = 90/132 (68.18%), Query Frame = -1
Query:  241 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 636
            +FSFRG  LD L +M  +E+ +L  AR RR   RGL  +   L++K R+A  E    +   P+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_AERPE (30S ribosomal protein S19P OS=Aeropyrum pernix GN=rps19p PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = -1
Query:  241 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG--EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 642
            +KKF +RG  L+ LL M  +EL +LF AR RR   RGL      L+ K+RK +R    G  ++P  +RTH+R+M+I+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + + V+HG PG+ AT SS  +  K
Sbjct:    9 WKKFRYRGRTLEELLKMDIEELARLFPARQRRSLLRGLTPAQQKLLLKVRKIRRRLEEGRLKRPPVIRTHVRDMVILPEMVGLTIAVYNGKEFIPVKIVPEMIGHYLGEFSPTTRIVQHGEPGLKATRSSLHVASK 144          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_METB6 (30S ribosomal protein S19P OS=Methanoregula boonei (strain 6A8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.127e-29
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            +P++R  ++F++RG  +D L  M   EL+ L  ARARR+F RGL R    L++K+R            E +RTHLR MI++PEMIG  I +YNGK F +VE +PE + HYL EF+++ K V HG  GIGAT  S+++PLK
Sbjct:   11 MPRRR--EEFTYRGYKIDELKAMGLSELIPLMPARARRKFNRGLNRGEETLLEKIRGGD---------EKIRTHLREMIVMPEMIGKSIEIYNGKEFLKVEFQPESVFHYLGEFALTRKRVTHGSAGIGATRGSKYVPLK 139          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.061e-28
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  241 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 633
            F +RG  L+ LL+MS DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   +RTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMSMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.386e-28
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  241 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 642
            +KKF +RG  L+ LL+M  D+ ++L  AR RR  +RG       L++K+ KA++E   G+K + +RTH+R+M+I+P M+G  I VYNGK F  V+I PEMIGHYL EFS +   VKHG PG+ AT SS F+  K
Sbjct:    7 WKKFRYRGKTLEELLEMPLDDFIELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPGLKATRSSLFVAAK 139          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = -1
Query:  241 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 636
            +F++RG  LD L +M  DE+ +L  AR RR  +RGL  +   L+ + R+A  E        P+RTHLR+M I+P  +G    VYNG++F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
The following BLAST results are available for this feature:
BLAST of CN185911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METS51.638e-2945.5230S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_HALLT3.648e-2946.3230S ribosomal protein S19P OS=Halorubrum lacusprof... [more]
RS19_SULSO4.765e-2946.2730S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_HYPBU4.765e-2950.7530S ribosomal protein S19P OS=Hyperthermus butylic... [more]
RS19_HALMA6.223e-2946.9730S ribosomal protein S19P OS=Haloarcula marismort... [more]
RS19_AERPE6.223e-2949.2630S ribosomal protein S19P OS=Aeropyrum pernix GN=... [more]
RS19_METB68.127e-2946.4330S ribosomal protein S19P OS=Methanoregula boonei... [more]
RS19_PYRAE1.061e-2852.6730S ribosomal protein S19P OS=Pyrobaculum aerophil... [more]
RS19_IGNH41.386e-2848.5130S ribosomal protein S19P OS=Ignicoccus hospitali... [more]
RS19_NATPD2.365e-2846.9730S ribosomal protein S19P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185911 ID=CN185911; Name=CN185911; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTAGGAAACAAACACAACAGCTTTTGACTGACATAAAAATA
ACCCTTTATCCAAGCCACATAACACCTCTTTAAACTACACATCACTTCCA
TTATCTAGATTAACAACTGAAACGCTAGTATTTAGTCCAACAACAAAAAA
AAAAAAAGTAACCACAAAAAATTTGATCAACTTCGATGTTTTCTGAAAAT
AACAATAAGCTAAATATCCAGATATCCAGCATACATCTCACTTAAGAGGA
ATGAACCTTGAGGAATGGGTAGCACCAATACCAGGTCTACCATGCTTCAC
AGGCTTGTATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCG
GCTTGATTTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATG
CTTCCAATCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAAC
TGGTTCGGGCTTCTCACCAGGTGGAGCCTCCCTTTTCGCCTTGCGAAGCT
TCTTGATCAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTG
CGCGCACGTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATCAAG
AAGAGCGTCCAAATCCACGCCTCTGAAACTGAACTTCTTGAACGTTCTCT
TCTTCGGCAGTCCTGCCGCCGCCGCCACCGCAACATCAGCATCGCCATCC
GCCATGGTTAGAGCTGGGACTGGTGAGATAAACAACTGCGAGTGTGAAGA
GAGGCTCCCGCTGGATCTGATCCT
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