CN185909

Overview
NameCN185909
Unique NameCN185909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185909_ssr159 microsatellite CN185909_ssr159:159..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185909 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = -2 
Query:  315 TATCVDILLAVISPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 464
            +AT ++++LA+I PP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52
[Close]
BLAST of CN185909 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = -2 
Query:  315 TATCVDILLAVISPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 464
            +AT ++++LA+I PP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52
[Close]
BLAST of CN185909 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = -2 
Query:  309 TCVDI---LLAVISPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 458
            TC DI   ++A+I PPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56
[Close]
BLAST of CN185909 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 26/48 (54.17%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  309 VDILLAVISPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 452
            +++L A+  PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
The following BLAST results are available for this feature:
BLAST of CN185909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LT01_HORVU1.829e-1366.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.829e-1366.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA1.712e-1162.26Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]
RC21_ARATH2.920e-1154.17UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185909 ID=CN185909; Name=CN185909; organism=Citrus sinensis; type=EST; length=825bp
CTTTTTTGGTTTGTGGGGACTGNAATGATTCACAAGGCAATTTACACACT
CACTATTACTCCACTTTACATCAACATATTGAATTAAAATTCATCCTAAA
GGACAAATGAAAGAAAAGAAAACGATAAAGATTAACAAACGAAACAAGTG
CTCTCTCCCACACACACACGCACACCCCAGTTGATTAAGAATCAGAACCC
ATCTGGGGGCATCAAATCAGAGCTGCCCATCTAACGGTTGTAAATAAAAG
ATCTCATAACACATGATGCCCTTGGGATCTCTCAATAGATGAAGACGAGA
GATCACTTCTTGGTGATGGCATAAACAGCATAAATAATTCCAGGGATATA
CCCCAGAATTGTCAAGAGCAAACAGATCCAAAACTCAGCCTTGCAACCAA
ATTTGAGAAAGACACCAAGAGGAGGCGAGATAACAGCCAAGAGAATATCT
ACGCATGTTGCTGTGCTTCCATCTGCCATCTTTGATTGATTCTTAAAAAG
TGTAAAATGGAATAAAATAAAATTTAGAGTCAAAAAACCTCTTCCTTCAG
TCTTCATTTCCCAGTTTCTGACTTTATTGCTTTGCGCTCCCTTCACTGAT
TCATTTCTGCTTCTTTTGTTGTTCAAGGAAGCCAAGCATTATGACTTATA
TATCGGAGATCACCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAA
TTGCCGAAGATGGTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTG
GACTCTTCAGGAAAACCGTAATGCATTCTCTAGGATTCTATTTCGACCAC
GCATTCTTAGAGATGTAAGCAAGAT
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