CN185895

Overview
NameCN185895
Unique NameCN185895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1957 contig Csv1_Contig1957:62..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 62/105 (59.05%), Postives = 84/105 (80.00%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 60/105 (57.14%), Postives = 83/105 (79.05%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 59/105 (56.19%), Postives = 83/105 (79.05%), Query Frame = -1
Query:  284 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 56/103 (54.37%), Postives = 78/103 (75.73%), Query Frame = -1
Query:  284 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+    D    + +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K+ IKIHGF
Sbjct:    8 SFDPFADTG--DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.838e-27
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = -1
Query:  284 SAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 595
            + FDPFA+A            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:    7 NTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CN185895 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  284 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 592
            +FDPFA+    D  A S +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K+ IKIHGF
Sbjct:    8 SFDPFADTG--DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
The following BLAST results are available for this feature:
BLAST of CN185895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE9.220e-3259.05Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA9.220e-3259.05Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN9.220e-3259.05Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB7.805e-3157.14Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN7.805e-3157.14Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN7.805e-3157.14Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE1.019e-3056.19Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_YEAST3.069e-2754.37Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ANOGA6.838e-2753.85Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_ASHGO8.930e-2755.34Protein translation factor SUI1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185895 ID=CN185895; Name=CN185895; organism=Citrus sinensis; type=EST; length=727bp
TTTTGAGGCGGAACAAACAACTATTCATATGAATTGAAAGCAGGAATACA
TCTTATTTTGCTTAAAATAAGTCTTGGAAGAAACCATAATATTCCCAAAC
AAAAGAACACTACTACAAACTAAAAAGTTTAAACGCACAAGCAAGCTTGC
ATCAAACTTTTTGTTTGGACAGCGTTACATAACACAACAGTCAATAATAA
ATTAATATATAGATCATATACTTCTTGCTACCAATAGTTGGAGATGGATA
AACAACATATAGCAACTTGGCTCCCACTATTTAGAAACCATGAATCTTGA
TGAATTCCTTCTTCACAATACCAGCCTGAACGAGGAAGGTGGACACATTC
TTCCTCTGGTCACCCTGAAGCTGTATGACCTGGCCTAACTCAGGGTCCTG
TACAACAGTACCATTACAGCAGAACTCTTTCTTGAGGTCCTTGAGAATCT
TGTTGTAGCTGAATTCTTTCTTCAACCCTTGCACAGTTGTCAGGCTTTTC
CTCCCATTACGTTGCTGCACGCGAATATGCACATAATCTTTTGAACCAGC
ACCTGAGTCCTCAGCATTTGCCTCAGCAAAGGGATCAAAGGCAGATGGAA
TCTGGGTGTCAAATTCAGACATGAAACTTGGTTGTTGGAGTGTCAAAGAG
TCCGTAACCAGCAAGAAATTGGCTTCAATTCACTTAAATTGCTCTTAGCT
TAAGAGGAAGATTGCGAATCAAACCCT
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