CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 66/138 (47.83%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  318 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAA---KEWRDRR 722
            K L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P                 PN  SPANV+A+   ++W++ +
Sbjct:   18 KGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.362e-29
Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 722
            + L +NP   F    V+E NI EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P    +            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   11 RHLIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 722
            + L +NP   F    V+E N+ EW V + GP DTLYEGG F A + FP NYP  PP + FT+E+WHPN+Y DGRVCISILH    +  G       W PV   +            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   11 RHLTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 63/154 (40.91%), Postives = 87/154 (56.49%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 722
            ++L +NP   F    V+E N+ EW V + GP DT YEGG F A ++FP NYP  PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P    E            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   11 RNLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 62/154 (40.26%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 722
            + L +NP   F    V+E ++ EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDG++CISILH    +  G       W P    +            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   11 RHLIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 64/148 (43.24%), Postives = 88/148 (59.46%), Query Frame = -3
Query:  270 KNPVAGFSAGLVDETNIFEWSVTI-IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 710
            K  +  F   L D++NIF W++ + +   D++Y GGFF A M FP ++P SPP  +FT  I+HPNVY DGR+CISILH  G DP   E  +E W PV T E            PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 722
            K+L  NP   F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FT+E+WHPN+Y DG++CISILH    +  G       W P    +            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   11 KNLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  270 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 722
            K +  +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF +E++HPNVY  G +C+ IL               RW P +               PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   14 KRMQTDPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = -3
Query:  270 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 722
            K +  +P AG SA  + + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY +G +C+ IL               RW P +               PN  SPANVEA+  ++D R ++ K+V   V RS E
Sbjct:   14 KRMQTDPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  270 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 722
            K +  +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P +               PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   14 KRMQTDPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UB2R1_HUMAN5.820e-3447.83Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFB77.362e-2941.56Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP42.142e-2842.21Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK52.798e-2840.91Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA6.233e-2840.26Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST6.233e-2843.24Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFM29.000e-2740.26Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC2_NECHA4.622e-2337.75Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_TRIHA7.884e-2337.09Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.345e-2237.75Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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