CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 722
            K L ++P AG S G   E NI  W   I GP +T +E G F   + F   YPN PPTVKF ++++HPNVY DG +C+ IL               RW P +               PN  SPAN  AA+ +++ R +++K+V + V +S
Sbjct:   14 KKLQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL-------------QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 722
            K L  +P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++               PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   14 KRLQHDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 50/132 (37.88%), Postives = 67/132 (50.76%), Query Frame = -3
Query:  270 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 665
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P +               PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWE 150          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 722
            K L ++P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++               PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   14 KRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 722
            K L  +P AG S G   E NI  W   I GP D+++EG  F   + F   YPN  PTVKF ++++HPNVY DG +C+ IL               +W P++               PN  SPAN E+A+ +R+ + ++ +KV   V +S
Sbjct:   14 KRLQSDPPAGIS-GAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL-------------QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = -3
Query:  264 AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL-HPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 698
            + +  G ++  +   W +      D+LY G    A+M FPS+YP  PPT+KF ++++HPN+Y DG++CISIL      D + +    ++W PV               SPN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:   53 SAYPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 51/149 (34.23%), Postives = 73/149 (48.99%), Query Frame = -3
Query:  276 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 722
            K L  +P  G S G     N+  W+  I GP DT +E G F  +++F  +YPN PPTVKF ++++HPNVY +G +C+ IL               RW P +               PN  SPAN EAA  +R+   ++ ++V   V  S
Sbjct:   14 KRLSTDPPGGIS-GAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEAS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = -3
Query:  303 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 695
            G SA    ++N+  W+ TI GP DT YEG  F   MSFP+NYP SPPT+ FT+ +WHPNV   G +C+ IL              ++W  V+  +            PN+ SP N +AA+ W     ++K+
Sbjct:   47 GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = -3
Query:  276 AGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 686
            +G  +  NI  W+  I GPP+T +E G F   ++F   YPN PPTV+F ++++HPN+Y +G +C+ IL               RW P +               PN  SPANV+AA+ +++   +++++V + V  S
Sbjct:   25 SGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL-------------QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELS 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 52/139 (37.41%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            +L   P  G SA   D  NIF W  TI G  DT+YE   F   + FP++YP  PPTVKF T+ +HPNV  +G +C+ IL              ++W PV+               PN+ESP N  AA  W   +D++KK
Sbjct:   17 NLMMGPSPGISA-FPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDIL-------------KDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW-SNQDEYKK 140          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBC1_CAEEL4.326e-2136.24Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_MEDSA5.650e-2133.56Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_KLULA5.650e-2137.88Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC1_ARATH5.650e-2133.56Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI1.259e-2034.90Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
Y1A1_ENCCU4.783e-2034.25Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC2_USTMA8.159e-2034.23Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC11_SCHPO1.066e-1936.64Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC2_CRYNE6.907e-1932.12Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2C_DICDI3.428e-1837.41Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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