DC900078

Overview
NameDC900078
Unique NameDC900078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:230..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    5 AARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            AA +T DR+T C CLK A + I    Y  G AAGLPG CG++IPY ISPST+C+ V
Sbjct:   63 AAATTPDRKTACNCLKSAANAIKGINY--GKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.711e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            N+A +T DR+T C CL  A   IS   +  GLAAGLP KCG++IPY+ISPST+C +V
Sbjct:   36 NSATTTQDRRTACKCLISASKTISGVNF--GLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    8 ARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            AR+TADRQT C CLK     IS        AAGLPGKCG+N+PY+IS ST+C+ V+
Sbjct:   62 ARTTADRQTACNCLKNLAGSISGVNPNN--AAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            +AAR   DRQ  C C+K   + IS   Y  G+AAGLPG+C ++IPY+ISPS DC RV+
Sbjct:   65 SAARIRLDRQAACKCIKSLAADISDINY--GVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    8 ARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            A S +D+Q VC C+K  V  +SY+   L  AA LPGKCG+ +PY+I PST+C+ ++
Sbjct:   61 ATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of DC900078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
NLTP_SPIOL4.373e-1157.14Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP3_VITSX5.711e-1156.14Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP_MALDO7.458e-1157.14Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP6_GOSHI7.458e-1153.45Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTPA_ARATH9.741e-1148.21Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionDC900078 VSS Citrus sinensis cDNA clone VS27Q84 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900078 ID=DC900078; Name=DC900078; organism=Citrus sinensis; type=EST; length=391bp
CAATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGA
AACAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCA
GCTGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCC
TTCTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATC
AGTTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAG
AGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTA
GCGTCATCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCC
CAACCATAAGTACTAAAGAATAAGATTTTGTAAGTTACGTT
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