DC900077

Overview
NameDC900077
Unique NameDC900077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5636 contig Csv1_Contig5636:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900077 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.260e-18
Identity = 55/215 (25.58%), Postives = 91/215 (42.33%), Query Frame = 3
Query:  177 PKLCVNGCAFFGTAANMGLCSKCYRD---------------------------LRVKEDQAASAKAAMEKSLNLKSP------------------------KQIHQTPELETAKVAAEPFVGXXXXXXXXXXXXVEQP-EPQAKG-------PTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 644
            P LC  GC F+G     G+CS CY++                           ++  +     A++A++ + +   P                        K + +T +L+  +  AE  V              +QP E Q+K          RC  C KKVGLTGF+C+CG+ +CG+HRY + H+C++++K    + I + NPVV  +K+ +I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSESLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDLQGPR--AEGLVPLECDPPSSVSDTTQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of DC900077 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.564e-18
Identity = 53/198 (26.77%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  177 PKLCVNGCAFFGTAANMGLCSKCYRDLRVKEDQA---ASAKAAMEKSLNLKSPKQIHQ--TPELETA-----------KVAAEPFVGXXXXXXXXXXXXVEQPEPQAKG--------------------------PTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 644
            P LC  GC F+G     G+CS CY++   +++ +    S  A    SL+   P Q      PE ++A            V+ +  +             V++  P+ +                             RC  C KKVGLTGF+C+CG+ +CG+HRY + H+C++++K    + I + NPVV  +K+ +I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of DC900077 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  462 RCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 644
            RC  C K+VGLTGF+C+CG  FC  HR+ E H+C+FD+K  GR+ IARANPV++A K+ +I
Sbjct:  114 RCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIKI 174          
BLAST of DC900077 vs. ExPASy Swiss-Prot
Match: SAP13_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 13 OS=Oryza sativa subsp. japonica GN=SAP13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.160e-13
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  435 PEPQAKGPTRCLSCNKKVGLTGFKCKCGSTFCGIHRYPEKHDCTFDFKV---TGRDAIARANPVVKADKLDRI 644
            P P+AK  +RC +C ++VGL GF+C+CG+ FCG H  P         ++    GRDAIARANPVV ADK+D++
Sbjct:  166 PPPRAKTKSRCAACGRRVGLMGFECRCGAVFCGAH--PLLGQARLWLRLQGRAGRDAIARANPVVSADKVDKL 236          
BLAST of DC900077 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  438 EPQAKGPTRCLSCNKKVGL-TGFKCKCGSTFCGIHRYPEKHDCTFDFKVTGRDAIARANPVVKADKLDRI 644
            + + K    C  C KK GL + ++C+CG+ FC  HRY E H CT+D+K  GR  +  ANPVV A KL +I
Sbjct:  658 QTKKKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of DC900077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ZFAN6_MOUSE4.260e-1825.58AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_BOVIN5.564e-1826.77AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP15_ORYSJ1.370e-1657.38Zinc finger AN1 domain-containing stress-associate... [more]
SAP13_ORYSJ3.160e-1349.32Zinc finger AN1 domain-containing stress-associate... [more]
ANUB1_HUMAN1.201e-1245.71AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionDC900077 VSS Citrus sinensis cDNA clone VS27Q83 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900077 ID=DC900077; Name=DC900077; organism=Citrus sinensis; type=EST; length=830bp
CCGAAACCAAAACCAGAACCAGCACCGCGGTTCTGCTCCTGCGCTTCCCA
TTTGAAACAGAAGAGATAGATCGCGGCGGGTCCTGCTGTAACAGAGTCCG
AGAAGATCCAAAACCCTAATTCGGAAAAAAGATGGGTTCAGAACAAAGCG
ATGGAACCAGCTACACCACATCTGAGCCAAAGCTCTGCGTCAACGGTTGT
GCCTTCTTCGGCACTGCGGCGAATATGGGCTTATGCTCAAAGTGTTACAG
GGATTTGCGGGTTAAGGAGGACCAAGCTGCCTCCGCAAAAGCCGCTATGG
AGAAATCTCTCAATTTGAAGTCACCGAAGCAAATCCATCAGACGCCAGAA
TTGGAGACTGCCAAGGTGGCTGCTGAGCCCTTTGTGGGTTCCTCGTTGTC
TGCTGCGGCCTCTCAACAGTTGAGTGTTGAGCAGCCTGAGCCCCAAGCCA
AGGGGCCTACCAGGTGCTTGAGTTGCAACAAGAAGGTCGGATTGACAGGG
TTCAAGTGTAAGTGCGGGAGTACTTTCTGTGGAATCCATCGGTACCCAGA
GAAGCATGATTGTACATTTGATTTTAAGGTTACTGGTCGTGACGCTATTG
CCAGAGCAAATCCTGTTGTCAAAGCTGATAAGCTGGACAGGATCTGAAAT
CAGAGTCTGGTAATTTGGAAAAANTTTGGTATGGTAATTGTGTCAGTTGG
GTTATTGTTGATTTAGCTTAGCTTTATTTCCTNCTGTTCTTGTTAGTGTT
GGTCAGGACTTGGGAGGGACTCGTAAATGTAGTTTCCTATCTGCATTGGA
TATACTCTATATAATGCGAAGAATCTTTCC
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