CN185884

Overview
NameCN185884
Unique NameCN185884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40
The following BLAST results are available for this feature:
BLAST of CN185884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_SOLLC6.192e-15100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR6.192e-15100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA6.192e-15100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ6.192e-15100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY6.192e-15100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE6.192e-15100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO6.192e-15100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL6.192e-15100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS6.192e-15100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU6.192e-15100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185884 ID=CN185884; Name=CN185884; organism=Citrus sinensis; type=EST; length=739bp
AGGAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTA
AATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGC
GACTGCGCTGACAGGAACCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGC
TGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGG
ACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGC
GCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAG
CAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAT
AATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATG
ATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCA
CTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCAT
GGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTATTATTGTTAGC
CGCACCCTTGCCGACTATAACATTCAGAAGGAGTCCACCCTCCACCTGGT
CCTCCGTCTAAGAGGTGGAATGCAGATATTTGTGAAAACCCTGACTGGTA
AAACTATCACCTTGGAAGTTGAGAGTTCTGATACAATCGACAATGTCAAG
GCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAG
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