CN185884

Overview
NameCN185884
Unique NameCN185884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQ 40
The following BLAST results are available for this feature:
BLAST of CN185884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_SCHPO1.379e-1497.50Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.379e-1497.50Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.379e-1497.50Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.379e-1497.50Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CHLRE1.801e-1497.50Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR2.353e-1497.50Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBL1_ORYSJ4.013e-1495.00Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_GEOCY4.013e-1495.00Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL4.013e-1495.00Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_AGLNE5.242e-1495.00Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185884 ID=CN185884; Name=CN185884; organism=Citrus sinensis; type=EST; length=739bp
AGGAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTA
AATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGC
GACTGCGCTGACAGGAACCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGC
TGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGG
ACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGC
GCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAG
CAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAT
AATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATG
ATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCA
CTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCAT
GGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTATTATTGTTAGC
CGCACCCTTGCCGACTATAACATTCAGAAGGAGTCCACCCTCCACCTGGT
CCTCCGTCTAAGAGGTGGAATGCAGATATTTGTGAAAACCCTGACTGGTA
AAACTATCACCTTGGAAGTTGAGAGTTCTGATACAATCGACAATGTCAAG
GCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAG
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