CN185882

Overview
NameCN185882
Unique NameCN185882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:106..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++GA    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  111 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 419
            VI   + + W   + KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + GA  + L++ +A
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  114 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 407
            +G   +++  E  +K  +    VVVDF A+WCGPC+ IAP L +L++    + F KVDVDEL  VA    V AMPTF F K G+  ++V GA    +Q
Sbjct:    1 MGVTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  153 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 431
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L+  I   LA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  141 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 428
            NE LQ    +++LV+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA  K  L  TI K+L
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  177 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 425
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  159 SNETKQ-LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 428
            S ET + +V+ DF A WCGPC+ IAP L EL +++ + L  +K+DVDE +  A  + V ++PT + LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  153 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 428
            Q+  E+   V+VDF A WCGPCR +AP + E+A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  168 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 428
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 33/91 (36.26%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  147 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-AKKEELQQTI 416
            +L +   T + VVVDF A+WCGPC+ + P   E+A+   +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL++ +
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELL 99          
The following BLAST results are available for this feature:
BLAST of CN185882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRX3_YEAST1.054e-1443.04Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
TXL1_SCHPO1.376e-1438.10Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_PENCH1.797e-1442.86Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_EMENI2.347e-1443.01Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CYAME3.066e-1445.36Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CHLMU3.066e-1445.24Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_BACSU3.066e-1445.16Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_SYNE74.004e-1444.68Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_CYACA5.230e-1441.57Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_MYCGA6.830e-1436.26Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185882 ID=CN185882; Name=CN185882; organism=Citrus sinensis; type=EST; length=638bp
CGCAAATCACCCGATTAAGAAAGCGAGGGAGAGAATAGAAGTATCGTTGG
GCGTAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGA
AGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGC
TCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCT
TCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGC
CAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGA
AGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTC
CTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGA
ACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAG
TTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATAT
ATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTT
GTTTGTGTGTTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATAC
TGTGGTCTTTACAATNNANNANAAAAAAAAAAAAAAAA
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