DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURS3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia sp. (strain 383) GN=aroA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.461e-34
Identity = 84/211 (39.81%), Postives = 111/211 (52.61%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G + +E+  +LIS PY+++T++LMERFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYELNEGYPPLRIKPANISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGKIVVEVDGELISKPYIDITIRLMERFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIDVRGIGHD---HGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_RALPJ (3-phosphoshikimate 1-carboxyvinyltransferase OS=Ralstonia pickettii (strain 12J) GN=aroA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.198e-34
Identity = 88/210 (41.90%), Postives = 109/210 (51.90%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX--GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L GVPRM ERPIGDLV GL+Q+GA +D       PP+ I+                  Q+              GNV IE++ +LIS PY+E+TL LM RFGV V   D W  F +  G  Y +PG  FVEGDASSASYF             EG G SS+QGDV+FA+ L +MGA      N + V G  RD      L AV+++ N
Sbjct:  111 YTLHGVPRMHERPIGDLVDGLRQVGARIDYTGNEGYPPLAIHAAPVKIDAPIRVRGDVSSQFLTALLMALPLVESAGNVTIEVVGELISKPYIEITLNLMARFGVQVAR-DGWSSFTVPTGVAYTAPGEIFVEGDASSASYFLAAGALGGGPVRVEGVGMSSIQGDVRFADALNRMGANVMAGGNWIEVRGAERDD---GKLHAVELDCN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURCA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=aroA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 85/211 (40.28%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G   +E+  +LIS PYV++T++LM RFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D   R  L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYELSEGYPPLRIKPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGQAVVEVDGELISKPYVDITIRLMARFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIDVRGIGHD---RGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURCC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=aroA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 84/211 (39.81%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G   +E+  +LIS PY+++T++LM RFGV VE  D W RF +  G +YKSPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYELNEGYPPLRIKPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRTVVEVDGELISKPYIDITIRLMARFGVTVER-DGWQRFVVPAGVRYKSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIDVRGIGHD---HGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_RALSO (3-phosphoshikimate 1-carboxyvinyltransferase OS=Ralstonia solanacearum GN=aroA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 86/211 (40.76%), Postives = 111/211 (52.61%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGN---VEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L GVPRM ERPIGDLV GL+Q+GA +D       PP+ I                   Q+            G+   V IE++ +LIS PY+E+TL LM RFGV VE  + W  F +  G  Y++PG  FVEGDASSASYF             EG G SS+QGDV+FA+ L +MGA     +N + V G  RD      L A++++ N
Sbjct:  112 YTLHGVPRMHERPIGDLVDGLRQVGARIDYTGNEGFPPLAIRAASIRIDAPIRVRGDVSSQFLTALLMALPLVEGSGRPVTIEVVGELISKPYIEITLNLMARFGVQVER-NGWASFSVPTGVAYRAPGEIFVEGDASSASYFLAAGALGGGPVRVEGVGMSSIQGDVRFADALNRMGANVMAGDNWIEVRGVERDD---GKLHALELDCN 318          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURCH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=aroA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 84/211 (39.81%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G   +E+  +LIS PYV++T++LM RFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYELSEGYPPLRIKPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGQAVVEVDGELISKPYVDITIRLMARFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIDVRGIGHD---HGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURCJ (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=aroA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.721e-33
Identity = 83/211 (39.34%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G   +E+  +LIS PY+++T++LM RFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYELNEGYPPLRIKPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRTVVEVDGELISKPYIDITIRLMARFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIDVRGIGHD---HGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURVG (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=aroA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 82/211 (38.86%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G + +E+  +LIS PY+++T++LMERFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  +  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYEQNEGFPPLRIKPAAITVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGKIVVEVDGELISKPYIDITIRLMERFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVSMGDDWIEVRGIGHD---HGKLDPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURCM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=aroA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 83/211 (39.34%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G   +EI  +LIS PY+++T++LMERFGV VE  D W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  +  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYEQNEGFPPLRIKPGTISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRTVVEIDGELISKPYIDITIRLMERFGVTVER-DGWQRFVVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVSMGDDWIEVRGIGHD---HGKLDPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURP8 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=aroA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 84/211 (39.81%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G   +E+  +LIS PY+E+T++LMERFG+ VE    W+RF I  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L KMGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRIHGVPRMHERPIGDLVDGLRQIGAKIDYEENEGFPPLRIRPAQISVDAPIRVRGDVSSQFLTALLMTLPLVKTESGETIVEVSGELISKPYIEITIRLMERFGIKVERF-GWERFTIPSGVRYQSPGKIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFATALMKMGANVTMGDDWIEVRGVGND---HGKLDPIDMDFN 316          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_BURS32.461e-3439.813-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_RALPJ4.198e-3441.903-phosphoshikimate 1-carboxyvinyltransferase OS=Ra... [more]
AROA_BURCA5.482e-3440.283-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURCC1.221e-3339.813-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_RALSO1.595e-3340.763-phosphoshikimate 1-carboxyvinyltransferase OS=Ra... [more]
AROA_BURCH2.083e-3339.813-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURCJ2.721e-3339.343-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURVG6.061e-3338.863-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURCM1.034e-3239.343-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURP81.350e-3239.813-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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