DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: ARO1_YEAST (Pentafunctional AROM polypeptide OS=Saccharomyces cerevisiae GN=ARO1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 61/206 (29.61%), Postives = 90/206 (43.69%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFA-EXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDV 691
            +L G  RM++RPI  LV  L+  G  ++ +      P+++                   QY              V + ++  K IS  YV+MT+K+ME+FG+ VE   +    +      Y +P    +E DASSA+Y                 G  SLQGD +FA + L+ MG K T T    TV+GPP       PL+ VD+
Sbjct:  523 VLTGNARMQQRPIAPLVDSLRANGTKIEYLNNEGSLPIKVYTDSVFKGGRIELAATVSSQYVSSILMCAPYAEEPVTLALVGGKPISKLYVDMTIKMMEKFGINVETSTTEPYTYYIPKGHYINPSEYVIESDASSATYPLAFAAMTGTTVTVPNIGFESLQGDARFARDVLKPMGCKITQTATSTTVSGPPVGTL--KPLKHVDM 726          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_METHJ (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=aroA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 56/192 (29.17%), Postives = 80/192 (41.67%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFG--VFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPP 649
            +L G  RM+ERP+G L+  L   GA + C+    CPPVRI+                  Q+             +V I +    +S+PY+ MT+  M  FG  V V+  D    F I   ++YK P    +EGD SS+SY+              G    S QGD +  E L  MG   T     + ++  P
Sbjct:  110 VLTGSGRMQERPLGPLIDTLNNAGAKITCLKNPGCPPVRID--GTFPAGDMYVDGSISSQFISSLLIAAPYADNDVHIHLTGDPVSLPYIMMTIDSMRAFGAEVLVDGDDKEPVFTISSQRRYK-PQTYGIEGDFSSSSYWFALAAICGGSATISGLNPQSAQGDRRLLEILVNMGCSITEKRESIILSRDP 298          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: ARO1_PNECA (Pentafunctional AROM polypeptide OS=Pneumocystis carinii GN=AROM PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 58/194 (29.90%), Postives = 84/194 (43.30%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXX-QYXXXXXXXXXXXXGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAE-XLEKMGAKXTWTENXVTVTGPPR 652
            IL G  RM++RPIG LV  LK  G  ++ +   NC P+ I                    QY              V + +I  K IS PY++MT+ +M  FG+ V    S +  +      Y  P    +EGDA+SA+Y                 G++SLQGD KF+E  L+ MG +   +     + GPP+
Sbjct:  513 ILTGSNRMKQRPIGPLVDALKNNGCCIEYLELENCLPLLIKPKEIGLYGGNINLSATVSSQYVSSILMCSPYAKTQVTLSLIGGKPISQPYIDMTISMMSSFGIKVTRSHSKENTYYIPKGCYTCPSEYIIEGDATSATYPLAIAAITGGSCTISNVGSASLQGDSKFSEYILKPMGCEVVQSPTTTYIKGPPK 706          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_METMJ (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=aroA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 57/186 (30.65%), Postives = 82/186 (44.09%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTV 637
            +L G PRM ERP+G L   L+ LG DV        PP+RI+                  Q+             +VE+ +     S  Y+++T  +M RFG  +E    +DRF ++ G+ Y+   +  VEGD SSASY               G   +S+QGD +F + LE MG       + VTV
Sbjct:  111 VLTGSPRMLERPVGPLAGALRALGGDVAFTGQPGYPPIRIS--GRLRGGRATIDGSISSQFVSSILMAAPYAEEDVELTLPATPASRSYLDVTADVMLRFGAHIER-QGYDRFRVESGRAYRG-RDYRVEGDYSSASYLFAVAAVCGGRVAVTGLNPTSVQGDRRFLDALEAMGCSVAAGTDAVTV 292          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: ARO1_SCHPO (Pentafunctional AROM polypeptide OS=Schizosaccharomyces pombe GN=aro1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 57/206 (27.67%), Postives = 91/206 (44.17%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFA-EXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDV 691
            +L G  RM+ RPIG LV  L+  G +++ +      P+ ++                  QY              V ++++  K IS  Y++MT+ +M  FGV V    + +  +     KY++P +  +E DASSA+Y                 G++SLQGD +FA + L  MG     T    TV GPP+      PL ++D+
Sbjct:  511 VLTGNHRMKVRPIGPLVDALRANGCEINYLEKQGSLPLDLSSKNGLKGGIIELAATVSSQYVSSILMCAPYASQPVTLKLVGGKPISQLYIDMTIAMMASFGVNVTKSTTEENTYNIPCGKYQNPPHYEIESDASSATYPLAIAAITGTKCTVPNIGSASLQGDARFACDVLRPMGCTVEQTATSTTVQGPPKGTL--KPLESIDM 714          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_METM6 (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=aroA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 52/191 (27.23%), Postives = 85/191 (44.50%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDR--FFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGP 646
            IL G   +R+RP+  L+  LKQLG +          P+ +                   Q+             + +I +   L S PY+ +T+ ++++FGV +E  +  ++  + I+G Q+Y SP    +EGD SSASY              +    +S QGD +  E ++KMGA     E+ V +TGP
Sbjct:  108 ILTGDDSIRKRPMQPLLDALKQLGIESFSTKNNGTAPIVVKSGKISNNVVEIRGDMSS-QFITSLMMTLPFSENDSKIVLTTPLKSEPYLNITIDVLDKFGVKIEKNEEKNKLGYKIKGNQRY-SPCEYIIEGDYSSASYLVAAGVLLNSDIVIKNVFKNSKQGDREIIEIVKKMGADVEINEDNVKITGP 296          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_METB6 (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanoregula boonei (strain 6A8) GN=aroA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 58/207 (28.02%), Postives = 83/207 (40.10%), Query Frame = 2
Query:   83 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFV-EGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            L G  RM+ERP+G L   L  LG  V        PPV I                   Q+            G V++ +     S  Y+++T  +M  FG  +   + + RF +     Y   G  FV EGD SSASYF              G    S+QGD  F + L++MG + T+  + VTV         + PL  + +NM+
Sbjct:  112 LTGSARMQERPLGPLAHTLNDLGGMVIFTKKEGYPPVTIGGRLLGGTATIDGSQSS--QFASSVMMAAPYSKGPVDLTVTGTPASQSYLDITAGVMTDFGAVIRR-EGYRRFLVSNCNHYT--GRTFVVEGDYSSASYFFALAAICGGKVTVAGLAPDSVQGDRLFLDALQRMGCEVTYAHDGVTVE-------NQGPLTGITINMS 306          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_META3 (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=aroA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  311 IEIIDKLISVPYVEMTLKLMERFGVFVE---HGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNM 697
            IE+   L S PY+++T+ ++++FGV +E   + +   +F I+G QKYK P +  VEGD SSASYF                  +S QGD +    ++KMGA     E+ + + GP +       L+ +D+++
Sbjct:  187 IELTTPLKSAPYLDITIDVLDKFGVKIEKVKNKNKLTKFIIKGNQKYK-PYSYTVEGDCSSASYFIAAGVLMNSDITINNIFKNSKQGDREIVNIVKKMGAPIIEEEDKIIIKGPYK-------LKGIDIDV 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_METM5 (Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=aroA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 51/191 (26.70%), Postives = 82/191 (42.93%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDR--FFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGP 646
            +L G   +R+RP+  L+  L QLG            P+ +                   Q+             + EI +   L S PY+ +T+ ++++FGV +E  +  ++  + I+G QKY  P +  +EGD SSASY              +     S QGD +  E ++KMGA     E+ V +TGP
Sbjct:  108 VLTGDDSIRKRPMQPLLDALNQLGLTCFSTKNNGTAPIVVKSGKISNNVVEIRGDVSS-QFITSIMMTLPFSENDSEIVLTTPLKSEPYLNITIDVLDKFGVKIEKNEEKNKSGYKIKGNQKYL-PCDYTIEGDYSSASYLVAAGVLLNSDIVIKNVFKDSKQGDREIIEIVKKMGANVEINEDHVKITGP 296          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_CLOTH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=aroA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 51/188 (27.13%), Postives = 81/188 (43.09%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTG 643
            +  G  ++R+RP+G L+  +  LGA+          PV +                   QY             + E+ I+ +L  VPYV+MTL  +++ G+  E+ D +  F+I+GGQ+Y+ P N  + GD SSA++F             +    +  QGD      LE MGAK       V + G
Sbjct:  109 VFTGDRQIRQRPLGPLLCAINNLGAEAFSTRNNGRAPVVVKGKLKGGRTEIDSVTS---QYLSSILINSPLIPLDTEV-IVTRLNEVPYVDMTLWWLDKLGIKYENHD-YKTFYIKGGQRYR-PLNVTIPGDFSSATFFAVQAAISGEEFVLDNLDMTDPQGDKMVFSILEDMGAKVKVEGKSVRIKG 290          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARO1_YEAST2.558e-1529.61Pentafunctional AROM polypeptide OS=Saccharomyces ... [more]
AROA_METHJ4.364e-1529.17Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
ARO1_PNECA9.722e-1529.90Pentafunctional AROM polypeptide OS=Pneumocystis c... [more]
AROA_METMJ6.302e-1430.65Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
ARO1_SCHPO2.395e-1327.67Pentafunctional AROM polypeptide OS=Schizosaccharo... [more]
AROA_METM61.006e-1127.23Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
AROA_METB61.006e-1128.02Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
AROA_META34.993e-1131.82Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
AROA_METM58.517e-1126.70Probable 3-phosphoshikimate 1-carboxyvinyltransfer... [more]
AROA_CLOTH8.517e-1127.133-phosphoshikimate 1-carboxyvinyltransferase OS=Cl... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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