DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURXL (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia xenovorans (strain LB400) GN=aroA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 85/212 (40.09%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+QLGA +D       PP+RI                   Q+               G   +++  +LIS PY+E+TLKLMERFG+ VE HG  W +F +  GQ+Y+SPG+  VEGDASSASYF             EG G +S+QGDV FA+ L +MGA     ++ + V G   D      L  +D++ N
Sbjct:  110 YRIHGVPRMHERPIGDLVDGLRQLGAKIDYEENEGYPPLRIRPGQINADAPITVRGDVSSQFLTSLLMTLPLVRTGSGVSTVQVDGELISKPYIEITLKLMERFGIKVERHG--WHQFVVPAGQRYQSPGSIMVEGDASSASYFLAAGALGGGPLKVEGVGRASIQGDVGFADALIRMGANLQMGDDWIEVRGVGHD---SGKLEPIDMDCN 316
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPY (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPS (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pestis (strain Pestoides F) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPN (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPG (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPE (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pestis GN=aroA PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERPA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERP3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I+  L+S PY+++TL LM+ FG+ V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK TW ++ +  +        R  L+ +D++MN
Sbjct:  110 GNSDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFRGGELTVDGRVSS--QFLTALLMTAPLAEQDTTIRIMGDLVSKPYIDITLHLMKAFGIDVGH-ENYQIFHIKGGQTYRSPGTYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGAKVTWGDDYIECS--------RGELQGIDMDMN 310
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_BURXL2.303e-3240.093-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_YERPY3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPS3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPP3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPN3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPG3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPE3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPB3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERPA3.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_YERP33.008e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
back to top