DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHESH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 85/212 (40.09%), Postives = 114/212 (53.77%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+  + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I+I  +L+S PY+++T+ LM +FGV V +  S++RF I+ GQ Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        + L+AVD++MN
Sbjct:  109 GHGEFTLTGEPRMEERPIGDLVDALRQLGANVTYLKNDGFPPLTINATGLDAGEVEIAGDLSS-QFLTALLMVAPLATGDVNIKIKGELVSKPYIDITIALMAQFGVQVVN-HSYERFEIKAGQGYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRMSIQGDVKFADVLEKMGADIEWGDDYIISRG--------STLKAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHESA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella sp. (strain ANA-3) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 86/212 (40.57%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  LKQLGA++  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G         PL AVD++MN
Sbjct:  109 GRGEFTLTGEPRMEERPIGDLVDALKQLGANIVYLKNDGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVQVINHD-YARFEIPAGQQYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARGA--------PLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURPP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 85/212 (40.09%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+QLGA +D       PP+RI                   Q+               G   +++  +LIS PY+E+T+KLMERFG+ VE HG  W +F +  GQ+Y+SPG   VEGDASSASYF             EG G +S+QGDV FA+ L KMGA     ++ + V G   D      L  +D++ N
Sbjct:  110 YRIHGVPRMHERPIGDLVDGLRQLGARIDYEENEGYPPLRIRPGQINADAPITVRGDVSSQFLTSLLMTLPLLRTESGVSTVQVDGELISKPYIEITIKLMERFGIKVERHG--WHQFVVPAGQRYQSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFADALIKMGANLQMGDDWIEVRGVGHD---SGKLEPIDMDCN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURA4 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 83/211 (39.34%), Postives = 108/211 (51.18%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G   +EI  +LIS PY+++T++LMERFGV VE  D W RF    G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  +  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYEQNEGFPPLRIKPGTISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRTVVEIDGELISKPYIDITIRLMERFGVTVER-DGWQRFVAPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVSMGDDWIEVRGIGHD---HGKLDPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHESR (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella sp. (strain MR-7) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 86/212 (40.57%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  LKQLGA++  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G         PL AVD++MN
Sbjct:  109 GRGEFTLTGEPRMEERPIGDLVDALKQLGANIMYLKNEGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVQVINHD-YARFEILAGQQYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARGA--------PLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_KLEP7 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 81/212 (38.21%), Postives = 115/212 (54.25%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +DC+   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV V++  S+ RF ++G Q+Y+SPG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA  TW ++ +  T           L+AVD++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAQIDCLEQENYPPLRLRGGFQGGNVEVDGSVSS--QFLTALLMTAPLAPQDTVIVIKGDLVSKPYIDITLHLMKTFGVEVDN-QSYQRFVVRGKQQYQSPGDYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSVQGDIRFADVLEKMGATVTWGDDFIACT--------HGELKAVDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ENT38 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Enterobacter sp. (strain 638) GN=aroA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 82/212 (38.68%), Postives = 115/212 (54.25%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +D +   N PPVR+                   Q+             +  I I   L+S PY+++TL LM+ FGV VE+  ++ RF ++G Q+Y+SPGN  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA  TW ++ ++ T        +  L AVD++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQKNYPPVRLRGGFTGGNVEVDGSVSS--QFLTALLMTAPLAPQDTVISIKGDLVSKPYIDITLHLMKTFGVEVEN-QAYQRFVVRGAQQYQSPGNYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSVQGDIRFADVLEKMGAVVTWGDDFISCT--------QGELNAVDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_KLEPN (3-phosphoshikimate 1-carboxyvinyltransferase OS=Klebsiella pneumoniae GN=aroA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 81/212 (38.21%), Postives = 115/212 (54.25%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I  +L+S PY+++TL LM+ FGV VE+  ++ RF ++G Q+Y+SPG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA  TW E+ +  T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFTGGDVEVDGSVSS--QFLTALLMASPLAPQDTVIAIKGELVSRPYIDITLHLMKTFGVEVEN-QAYQRFIVRGNQQYQSPGDYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSVQGDIRFADVLEKMGATVTWGEDYIACT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBCM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI                   Q+            G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F I  GQ Y SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA+  W ++ V           R  L AVD++ N
Sbjct:  109 GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISS-QFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIAR--------RGELNAVDLDFN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBCH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae GN=aroA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI                   Q+            G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F I  GQ Y SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA+  W ++ V           R  L AVD++ N
Sbjct:  109 GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISS-QFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIAR--------RGELNAVDLDFN 310          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_SHESH3.008e-3240.093-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHESA3.008e-3240.573-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_BURPP3.008e-3240.093-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURA43.008e-3239.343-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_SHESR3.929e-3240.573-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_KLEP73.929e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Kl... [more]
AROA_ENT383.929e-3238.683-phosphoshikimate 1-carboxyvinyltransferase OS=En... [more]
AROA_KLEPN5.131e-3238.213-phosphoshikimate 1-carboxyvinyltransferase OS=Kl... [more]
AROA_VIBCM6.701e-3238.683-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_VIBCH6.701e-3238.683-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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