DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEWM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=aroA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 86/212 (40.57%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   +IL G PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I+I  +L+S PY+++TL LM +FGV V + D ++RF I+ GQ Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA+  W ++ +              L AVD++MN
Sbjct:  109 GEGEFILTGEPRMEERPIGDLVDALRQLGAEVTYLKSEGFPPLTINATGLNAGDVEIAGDLSS-QFLTALLMVSPLAKGDVNIKIKGELVSKPYIDITLALMAQFGVKVINHD-YERFEIKSGQSYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGAEIEWGDDYIISRVA--------KLNAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEPC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=aroA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 84/212 (39.62%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA++  +     PP+ IN                  Q+            G+V I +  +L+S PY+++T+ LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        +PL AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGANIVYLKNDGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITIALMAQFGVNVINHD-YARFEIVAGQRYISPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARG--------SPLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_YERE8 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=aroA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 82/212 (38.68%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA +D +   N PP+RI                   Q+             + EI+I  +L+S PY+++TL LM+ FGV V H +++  F I+GGQ Y+SPG   VEGDASSASYF              G G  S+QGD KFA+ LEKMGAK +W ++ +  +        R  L+ +D++MN
Sbjct:  110 GKNDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRIRGGFRGGKLTVDGSVSS--QFLTALLMTAPLAEQDTEIQIQGELVSKPYIDITLHLMKAFGVDVVH-ENYQIFHIKGGQTYRSPGIYLVEGDASSASYFLAAAAIKGGTVRVTGIGKQSVQGDTKFADVLEKMGAKISWGDDYIECS--------RGELQGIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BURM1 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=aroA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 82/211 (38.86%), Postives = 108/211 (51.18%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y + GVPRM ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G   +EI  +LIS PY+++T++LM RFGV VE  + W RF +  G +Y+SPG   VEGDASSASYF             EG G +S+QGDV FA  L +MGA  T  ++ + V G   D      L  +D++ N
Sbjct:  110 YRVHGVPRMHERPIGDLVDGLRQIGAQIDYEQNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRSIVEIDGELISKPYIDITIRLMARFGVNVER-EGWQRFTVPAGVRYRSPGRIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFAHALMQMGANVTMGDDWIEVRGIGHD---HGKLEPIDMDFN 316          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHESM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella sp. (strain MR-4) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 85/212 (40.09%), Postives = 109/212 (51.42%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  LKQLGA++  +     PP+ IN                  Q+             +V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G         PL AVD++MN
Sbjct:  109 GRGEFTLTGEPRMEERPIGDLVDALKQLGANIVYLKNEGFPPLAINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKDSVNIHVKGELVSKPYIDITLALMAQFGVQVINHD-YARFEIPAGQQYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARGA--------PLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEB5 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 85/212 (40.09%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        + L AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGANVVYLKNDGFPPLTINATGLSGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVTVINHD-YARFEIVAGQRYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARG--------SQLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEB2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella baltica (strain OS223) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 85/212 (40.09%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        + L AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGANVVYLKNDGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVTVINHD-YARFEIVAGQRYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARG--------SQLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEB8 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella baltica (strain OS185) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 85/212 (40.09%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        + L AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGANVVYLKNDGFPPLTINATGLSGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVTVINHD-YARFEIVAGQQYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARG--------SQLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_KLEP3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Klebsiella pneumoniae (strain 342) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV V++  S+ RF ++G Q+Y+SPG+  VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L+A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGGFQGGNVEVDGSVSS--QFLTALLMTAPLAPQDTVIAIKGDLVSKPYIDITLHLMKTFGVEVDN-QSYQRFVVRGKQQYQSPGDYLVEGDASSASYFLAAGAIKGGTVKVTGIGRGSVQGDIRFADVLEKMGATVTWGDDFIACT--------RGELKAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_CELJU (3-phosphoshikimate 1-carboxyvinyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 78/209 (37.32%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   74 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +Y L GVPRM ERPIGDLV  L+Q+GAD+  +     PP+ I                   Q+                IE++ +LIS PY+E+TL+LM +FGV V+  D W+RF +     Y SPG  +VEGDASSASYF             +G G  S+QGDV FA+ LE +G   T  +N +  + P      + PL+A + + N
Sbjct:  110 TYKLHGVPRMHERPIGDLVDALRQVGADITYLGQEGFPPLLIKPAHIAAQGSIKIRGDVSSQFLTALLMALPMTGKETHIELVSELISKPYIEITLRLMAQFGVEVQR-DGWERFTVPAASGYVSPGTVYVEGDASSASYFLAAGALGGGPVRVQGVGAKSIQGDVAFADALEAIGVTITKGDNWIEASAP------QLPLKAFNRDFN 311          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_SHEWM6.701e-3240.573-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEPC8.752e-3239.623-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_YERE81.143e-3138.683-phosphoshikimate 1-carboxyvinyltransferase OS=Ye... [more]
AROA_BURM11.143e-3138.863-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_SHESM1.950e-3140.093-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEB51.950e-3140.093-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEB21.950e-3140.093-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEB82.547e-3140.093-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_KLEP32.547e-3137.743-phosphoshikimate 1-carboxyvinyltransferase OS=Kl... [more]
AROA_CELJU2.547e-3137.323-phosphoshikimate 1-carboxyvinyltransferase OS=Ce... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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