DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBC3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 81/212 (38.21%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   Y+L G PRM+ERPIG LV  L+Q  A ++ +   N PP+RI                   Q+            G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F I  GQ Y SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA+  W ++ V           R  L AVD++ N
Sbjct:  109 GQGDYVLTGEPRMKERPIGHLVDALRQASAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISS-QFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIAR--------RGELNAVDLDFN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SULNB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 78/212 (36.79%), Postives = 120/212 (56.60%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+ +Y+L G PRM+ERPIG LV  L++ GA +  +     PP++I                   Q+            G+++I+I+ +L+S PY+++TL +M++FGV V + ++++RFFI+GGQ Y++     VEGDASSASYF              G G +S+QGDV FA+ LEKMGAK  W ++ V+V+        R  L AV+++ N
Sbjct:  109 GSGTYVLTGEPRMKERPIGHLVDALREAGAKITYLENEGYPPLKIEADGLKGGEVRIDGSISS-QFLTALLMAAPMARGDMQIDIVGELVSKPYIDITLHIMKQFGVEVRN-ENYERFFIKGGQIYQALETFMVEGDASSASYFLAAAAIKGGTVKVTGIGKTSVQGDVAFADVLEKMGAKVEWGDDYVSVS--------RGELNAVNMDFN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SERP5 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Serratia proteamaculans (strain 568) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +D +  T+ PP+R+                   Q+             +  I I  +L+S PY+++TL LM  FGV V H D++  F I G Q Y+SPG+  VEGDASSASYF              G G  S+QGD KFA+ LEKMGA+ TW ++ +  +        R  LR +D++MN
Sbjct:  110 GSNDVVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQTDYPPLRLRGGFRGGDVTVDGSVSS--QFLTALLMTAPLAEQDTHIHIKGELVSKPYIDITLHLMRTFGVEVSH-DNYRVFHINGRQTYRSPGDYLVEGDASSASYFLAAAAIKGGTVRVTGIGKKSVQGDTKFADVLEKMGARITWGDDYIECS--------RGELRGIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_CITK8 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=aroA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV VE+  ++ RF ++G Q+Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA  TW ++ +  T        R  L AVD++MN
Sbjct:  114 VLTGEPRMKERPIGHLVDALRQGGAKIDYLEQENYPPLRLRGGFSGGHVEVDGSVSS--QFLTALLMTAPLAPQDTTIAIKGDLVSKPYIDITLNLMKTFGVEVEN-QNYQRFVVKGEQQYRSPGQYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELNAVDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEHH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=aroA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ I                   Q+            G+V I+I  +L+S PY+++TL LM +FGV V++ D +  F I+ GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LE+MGA   W ++ +           +  L+AVD++MN
Sbjct:  109 GQGQFTLTGEPRMEERPIGDLVDALRQLGAEVSYLKNEGFPPLNITSTGLNGGNVEIAGDLSS-QFLTALLMVAPLAKGDVNIKIKGELVSKPYIDITLALMAQFGVEVQNND-YASFVIKAGQRYVSPGKVLVEGDASSASYFLAAGAIQGGEVKVTGVGKLSIQGDVKFADVLEQMGADIEWGDDYIIAR--------QAKLKAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEON (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella oneidensis GN=aroA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 84/212 (39.62%), Postives = 108/212 (50.94%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA++  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V +   + RF I  GQ Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G         PL AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGANIVYLKNDGFPPLTINATGLNGGDVEIVGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVKVIN-HHYARFEIPAGQHYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARGA--------PLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALA4 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella agona (strain SL483) GN=aroA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 78/212 (36.79%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQKY SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQKYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ERWCT (3-phosphoshikimate 1-carboxyvinyltransferase OS=Erwinia carotovora subsp. atroseptica GN=aroA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 77/207 (37.20%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R++                  Q+             + +I I   L+S PY+++TL +M+ FG+ V H +++ RFF+ G Q+Y+SPG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W E+ +           R  L A+D++MN
Sbjct:  115 VLTGEPRMKERPIGHLVDALRQGGAKIDYLEQENYPPLRLHGGFQGGEISVDGSVSS--QFLTALLMTAPLAAQDTQISIQGDLVSKPYIDITLHMMKAFGIDVRH-ENYQRFFVAGRQQYRSPGDYLVEGDASSASYFLAAAAIKGGVVRVTGVGRNSVQGDIRFADVLEKMGAIVRWGEDYIECE--------RGELHAIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBPA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio parahaemolyticus GN=aroA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 75/189 (39.68%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            G   Y+L G PRM+ERPIG LVT L++ GAD++ +  TN PP++I                   Q+            G V I+I   L+S PY+++TL +M++FGV V + D +  F I  GQ Y +PG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA+  W ++ V
Sbjct:  109 GQGEYVLTGEPRMKERPIGHLVTALQKAGADIEYLENTNYPPLKI-VGTGLKAGTVSIDGSISSQFLTAFLMSAPLAEGEVRIKIEGDLVSKPYIDITLHIMKQFGVEVINND-YQEFVIPAGQHYVAPGDFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAEIEWGDDYV 295          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBSL (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio splendidus (strain LGP32) GN=aroA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 75/189 (39.68%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            G   Y+L G PRM+ERPIG LVT L++ GADV+ +   N PP++I                   Q+            G V I+I  +L+S PY+++TL +M++FGV V + D +  F I  GQ Y +PG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA+  W ++ V
Sbjct:  109 GRGEYVLTGEPRMKERPIGHLVTALREAGADVEYLENENYPPLKITGTGLKSGTVSIDGSISS-QFLTAFLMAAPLAEGEVTIKIEGELVSKPYIDITLHIMKQFGVDVINND-YQEFVIPTGQSYTAPGDFLVEGDASSASYFLAAAAIKGGEIKVTGIGKNSIQGDIQFADALEKMGAEIEWGDDYV 295          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_VIBC33.326e-3138.213-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_SULNB3.326e-3136.793-phosphoshikimate 1-carboxyvinyltransferase OS=Su... [more]
AROA_SERP53.326e-3138.213-phosphoshikimate 1-carboxyvinyltransferase OS=Se... [more]
AROA_CITK83.326e-3138.653-phosphoshikimate 1-carboxyvinyltransferase OS=Ci... [more]
AROA_SHEHH4.344e-3138.683-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEON5.673e-3139.623-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SALA47.409e-3136.793-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_ERWCT7.409e-3137.203-phosphoshikimate 1-carboxyvinyltransferase OS=Er... [more]
AROA_VIBPA9.677e-3139.683-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_VIBSL1.264e-3039.683-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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