DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHELP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=aroA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 83/212 (39.15%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+  + L G PRM ERPIGDLV  L  LGAD+  +     PP+ IN                  Q+              V I+I  +L+S PY+++T+ LM +FGV V + D + RF I  GQKY SPG   VEGDASSASYF              G G  S+QGDVKFAE LE MGA+  W ++ +             PL  VD++MN
Sbjct:  109 GSGEFTLTGEPRMEERPIGDLVDALNALGADIRYLKQPGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVTPLAKAQVNIKIKGELVSKPYIDITIALMAQFGVTVINHD-YQRFEIPAGQKYVSPGTVLVEGDASSASYFLAAGAIQGGEVKVTGVGLKSIQGDVKFAEVLEAMGAQIEWGDDFIIARSA--------PLHGVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEB9 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella baltica (strain OS195) GN=aroA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 84/212 (39.62%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L   PRM ERPIGDLV  L+QLGA+V  +     PP+ IN                  Q+            G+V I +  +L+S PY+++TL LM +FGV V + D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA+  W ++ +   G        + L AVD++MN
Sbjct:  109 GQGEFTLTCEPRMEERPIGDLVDALRQLGANVVYLKNDGFPPLTINATGLSGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITLALMAQFGVTVINHD-YARFEIVAGQRYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGAEIEWGDDYIIARG--------SQLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALSV (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=aroA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGEIEVDGSVSS--QFLTALLMTAPLAPEDTTIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEPW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 83/212 (39.15%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGADV  +     PP+ IN                  Q+            G+V I+I  +L+S PY+++TL LM +FGV V + +++  F I+ GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ L +MGA   W ++ +   G        + L AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDSLRQLGADVSYLKNDGFPPLTINATGLSGGDVEIAGDLSS-QFLTALLMVAPLAKGDVNIKIKGELVSKPYIDITLALMAQFGVNVTN-NNYVSFEIKTGQRYISPGKLLVEGDASSASYFLAAGAIKGGEVKVTGVGKLSIQGDVKFADVLAQMGADIEWGDDYIIARG--------SKLNAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PHOLL (3-phosphoshikimate 1-carboxyvinyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=aroA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 80/213 (37.56%), Postives = 109/213 (51.17%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMNK 703
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+ +                   Q+             + EI I  +L+S PY+++TL LM+ FG+ + H D +  F I+G Q+Y SPG+  VEGDASSASYF              G G +SLQGD KFA  LEKMGAK  W ++ V           R  L  +D++MN+
Sbjct:  109 GKNDVVLTGEPRMKERPIGHLVDALRQGGAEIDYLEQENYPPLHVKGGFVGGKVMVDGRVSS--QFLTALLMAAPLAENDSEIHIQGELVSKPYIDITLALMKSFGITINH-DQYQIFHIKGRQQYVSPGHYLVEGDASSASYFLAAAAIKGGTVRVTGIGKNSLQGDTKFANVLEKMGAKIRWGDDFVECE--------RGTLTGIDMDMNE 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBVY (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio vulnificus (strain YJ016) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            G   ++L G PRM+ERPIG LV  L++ GA ++ +   N PP++IN                  Q+            G V+I I+ +L+S PY+++TL +M++FGV V + +++  F I  GQ Y SPG   VEGDASSASYF              G G +S+QGD+ FA+ LEKMGA+  W E+ V
Sbjct:  109 GKGEFVLTGEPRMKERPIGHLVDALREAGAQIEYLENENYPPLKINATGLQAGTVNIDGSISS-QFLTAFLMAAPLAQGEVKIHIVGELVSKPYIDITLHIMKQFGVDVVN-NAYQEFIIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEIKVTGIGKNSIQGDIHFADALEKMGAEIEWGEDYV 295          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHESW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella sp. (strain W3-18-1) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 83/212 (39.15%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L++LGA+V  +     PP+ IN                  Q+            G+V I +  +L+S PY+++T+ LM +FGV V + D + RF I  GQ+Y SP    VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +   G        +PL AVD++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRKLGANVVYLKNDGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLAKGSVNIHVKGELVSKPYIDITIALMAQFGVNVINHD-YARFEIVAGQRYISPCKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADVLEKMGADIEWGDDYIIARG--------SPLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEPA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA+V  +     PP+ I+                  Q+             +V I+I  +L+S PY+++TL LM +FGV V++ D +  F I+ GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ L++MGA+  W ++ +   G          L AVD++MN
Sbjct:  109 GQGDFTLTGEPRMEERPIGDLVDALRQLGAEVSYLKNDGFPPLSISSTGLNGGNVEIAGDLSS-QFLTALLMVAPLAKDDVNIQIKGELVSKPYIDITLALMAQFGVKVQNND-YASFVIKAGQRYVSPGKVLVEGDASSASYFLAAGAIQGGEVKVTGVGKLSIQGDVKFADVLQQMGAEIEWGDDYIISRGA--------KLTAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEDO (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 83/212 (39.15%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGA V  +     PP+ IN                  Q+            G V I I  +L+S PY+++TL LM +FGV V++ D + RF I  GQ+Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ LEKMGA   W ++ +              L  +D++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGASVTYLKNDGFPPLTINATGLNGGDVDIAGDLSS-QFLTALLMVAPLAKGKVNINIKGELVSKPYIDITLALMAQFGVDVQNHD-YARFEINPGQQYLSPGKVLVEGDASSASYFLAAGAIAGGSVKVTGVGRLSIQGDVKFADALEKMGADIEWGDDFIIARSA--------KLSGIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALTY (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella typhimurium GN=aroA PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_SHELP1.264e-3039.153-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEB91.264e-3039.623-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SALSV1.264e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SHEPW1.651e-3039.153-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_PHOLL1.651e-3037.563-phosphoshikimate 1-carboxyvinyltransferase OS=Ph... [more]
AROA_VIBVY2.156e-3038.623-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]
AROA_SHESW2.156e-3039.153-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEPA2.156e-3038.213-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SHEDO2.156e-3039.153-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SALTY2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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