DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALTI (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella typhi GN=aroA PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALPK (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALPC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALPB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALPA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella paratyphi A GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALNS (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella newport (strain SL254) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALGL (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella gallinarum GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALG2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALEP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALDC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella dublin (strain CT_02021853) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_SALTI2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALPK2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALPC2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALPB2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALPA2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALNS2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALGL2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALG22.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALEP2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SALDC2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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