DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALCH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella choleraesuis GN=aroA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIAN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ERWT9 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=aroA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 81/212 (38.21%), Postives = 109/212 (51.42%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            GN   +L G PRM+ERPIG LV  L+Q GA+V+ +   N PP+R+                   Q+             +  I I   L+S PY+++TLKLM  FGV VE+ D +D F I G Q+Y++     VEGDASSASYF              G G +S+QGD+ FA+ LEKMGA   W ++ +  T        R  L AVD++MN
Sbjct:  110 GNGDVVLTGEPRMKERPIGHLVDALRQGGAEVEYLEQENYPPLRVKGGFSGGEVTVNGSVSS--QFLTALLMAAPLAPNDTRIVIKGDLVSKPYIDITLKLMATFGVVVENND-YDTFHISGQQQYQATREYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIHFADVLEKMGASVEWGDDYIACT--------RGDLNAVDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALAR (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=aroA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D +   N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNETVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIMN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEAM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=aroA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 81/212 (38.21%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGAD+  +     PP+ IN                  Q+            G V I +  +L+S PY+++TL LM +FGV V + D++ RF I  GQ Y SPG   VEGDASSASYF              G G  ++QGDVKFA+ L  MGA   W E+ +   G        + L  +D++MN
Sbjct:  109 GTGEFTLTGEPRMEERPIGDLVDALRQLGADIRYLKNDGFPPLTINATGLAGGVVEIDGSLSS-QFLTALLMVAPLAKGAVTIAVKGELVSKPYIDITLDLMAKFGVTVVN-DNYQRFEIASGQHYVSPGKVLVEGDASSASYFLAAGAIGGGEVKVTGVGRLAVQGDVKFADALAAMGADIEWGEDYIIARG--------SKLHGIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SALHS (3-phosphoshikimate 1-carboxyvinyltransferase OS=Salmonella heidelberg (strain SL476) GN=aroA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 77/212 (36.32%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G PRM+ERPIG LV  L+Q GA++D     N PP+R+                   Q+             +  I +  +L+S PY+++TL LM+ FGV + +   + +F ++GGQ+Y SPG   VEGDASSASYF              G G  S+QGD++FA+ LEKMGA  TW ++ +  T        R  L A+D++MN
Sbjct:  109 GQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYQEQENYPPLRLRGGFTGGDIEVDGSVSS--QFLTALLMTAPLAPEDTTIRVKGELVSKPYIDITLNLMKTFGVEITN-HHYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRFADVLEKMGATITWGDDFIACT--------RGELHAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PSYIN (3-phosphoshikimate 1-carboxyvinyltransferase OS=Psychromonas ingrahamii (strain 37) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   YIL G  RM ERPIG LV  L+Q GA V  +   N PP++I                   Q+             + EIEI+ +L+S PY+++TL++M  FG+ V++  +++RF I+G Q Y +PG+  VEGDASSASYF              G G  S+QGD++FA+ LE MGAK  W ++ +  +        +  L+A+D++MN
Sbjct:  111 GQGEYILTGEARMFERPIGSLVDALQQAGAQVTYLENENYPPLKIKGTGLKGGKIKIDGSVSS-QFLTAFLMAAPMAMEDTEIEIVGELVSKPYIKITLQIMHDFGIDVDN-HNFERFIIKGKQTYSAPGHYLVEGDASSASYFLAAGAIAGGCIKVTGIGKKSVQGDIQFADALEAMGAKIEWGDDYIKAS--------KGELKAIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOUT (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOL6 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O6 GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOL5 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOK1 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O1:K1 / APEC GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_SALCH2.156e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_ERWT92.816e-3038.213-phosphoshikimate 1-carboxyvinyltransferase OS=Er... [more]
AROA_SALAR3.677e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_SHEAM4.803e-3038.213-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]
AROA_SALHS4.803e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Sa... [more]
AROA_PSYIN6.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_ECOUT6.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECOL66.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECOL56.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECOK16.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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