CN185880

Overview
NameCN185880
Unique NameCN185880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 67/153 (43.79%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  126 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLAT-GKNLLKTPKWV 581
            WRLIT+F F G+F  +F   ++   RY + LE+G F  R ADF++M +FGA+ L++LS I + +  FLG +   MLVY+WSR  P  Q+N +G++T  A YLPW +L   ++ G+  V D +GI  GH+Y+FL  + P    GK  LKTP+W+
Sbjct:   53 WRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAV-LMILSGIFV-QILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWL 203          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 67/158 (42.41%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 593
            VWRLIT F F G     F   +L + RY   LE+G F  R ADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P+ ++N +GL+  +A +LPWA++   ++ G+ +V DLLGI+ GH+YYFL  + P    GK LL TP  ++ L+
Sbjct:   54 VWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSL--FFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLL 209          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = 3
Query:  126 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIFRS-----YFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 596
            WRL+TNF +     ++F   +  +ARY   LE+  F  +TADFL+M++FGA  L    L+   IP   +      FL  SL FM+VYVWS++ P   ++  GL T  A YLPW +L   ++ G+    DLLG+IAGH YYFL  ++P  T +  LKTP +++ L A
Sbjct:   54 WRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFA 219          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  126 WRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 596
            WRL+TNF +     ++F   +  +ARY   LE+  F  +T DFL+M++FGA  L    L+   IP       +  FL  SL FM+VYVWS++ P   ++  GL T  A YLPW +L   ++ G+    D LG+IAGH YYFL  ++P  T +  LKTP +++ L A
Sbjct:   54 WRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFA 219          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 73/189 (38.62%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 683
            +WRLITNF F G    NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   54 IWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 73/189 (38.62%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 683
            +WRLITNF F G    NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   54 IWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 72/189 (38.10%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 683
            +WRLITNF F G    NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ DLLGI  GH+Y+FL  + P   G   +LKTP  + + +       P  N    ER  G A+ G   RL
Sbjct:   54 IWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPS-ILRTIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  123 VWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVI-FGSPLVPDLLGIIAGHLYYFLTVLHPLATG-KNLLKTPKWVQKL 590
            +WRLIT    + +    F   L+   +Y   LE   +  ++ D+L+ +IF ++  ++   I  F  YFLG   +  L+Y++SR  P    N YG  + K  YLPW  L    +  G P   D L I++GH++++LT ++P A G   L+KTPK++  +
Sbjct:   52 LWRLITAPCIISSLGPMFLFNLIFFYQYTTRLESLNYAGKSDDYLFCIIFISICNIIFGLI--FEYYFLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNI 207          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 58/202 (28.71%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689
            +WR IT  F+     GT  + + + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   52 IWRPITATFYFPVGPGTGFL-YLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CN185880 vs. ExPASy Swiss-Prot
Match: DERL1_BOVIN (Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 58/202 (28.71%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  123 VWRLITNFFFL----GTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 689
            +WR IT  F+     GT  + + + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ +L+G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   52 IWRPITATFYFPVGPGTGFL-YLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
The following BLAST results are available for this feature:
BLAST of CN185880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DERL2_CAEEL3.381e-3143.79Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL3_MOUSE1.285e-3042.41Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DER22_ARATH8.327e-3040.96Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH7.050e-2939.76Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_PONAB9.207e-2938.62Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_HUMAN9.207e-2938.62Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_MOUSE1.570e-2838.10Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL1_DICDI1.740e-1932.28Probable derlin-1 homolog OS=Dictyostelium discoid... [more]
DERL1_HUMAN1.247e-1728.71Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]
DERL1_BOVIN1.247e-1728.71Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185880 ID=CN185880; Name=CN185880; organism=Citrus sinensis; type=EST; length=712bp
GATTTTTTGCTGCTGCTTATTGTCTCTTCGGAGCATACTACCTTTAAGGG
GAAAACGAAGATCTAAAGCTGCGCGTTTCGCTTGAATTAGCCATCTGAGT
CCGCAATGTCTTCACCTGCTGAGTATGGAGGTTGATAACAAATTTCTTTT
TCCTTGGAACTTTTTCAATCAATTTTGGGATTCGCCTTTTGATGATAGCG
AGATATGGAGTTAACCTGGAGAAGGGACCATTTGAAAGGCGTACAGCAGA
TTTTTTATGGATGATGATTTTTGGAGCCTTATCTCTGTTGGTGTTGTCAG
CCATCCCCATATTTCGATCTTATTTCCTAGGGATATCACTTGTTTTTATG
CTTGTCTATGTCTGGAGTAGAGAATTCCCAAATTCTCAGATCAATATATA
TGGCCTCGTGACACTTAAGGCATTTTATCTACCATGGGCTATGCTTGCTT
TGGACGTCATTTTTGGTTCACCCCTTGTACCAGACCTGCTGGGAATCATA
GCAGGACATCTGTATTACTTTTTGACTGTCTTACATCCACTTGCAACTGG
AAAGAACTTGTTGAAGACTCCAAAATGGGTACAAAAACTGGTGGCGAGGT
GGAGAATCGGAGCTCCAGCTATCAATCGTGCCCAGCCTGAAAGGACAACT
GGTGTGGCTTTCAGAGGAAGATCATATCGTTTAAGCGATTGATTATAATA
TGGCAACGTTCT
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