CN185869

Overview
NameCN185869
Unique NameCN185869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1162 contig Csv1_Contig1162:70..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185869 vs. ExPASy Swiss-Prot
Match: DAPL_BACLD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dapL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = -1 
Query:  392 DPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPFFPPTINNNDLHKYFQTVAGDMLDTQKVKVMAPVMGSEDFSFYQEVMPGYFFFLGM 775
            DPLDS V+T+    GG A N+I     + GT R  S  S  Q+K+RIE ++ G     +CS  V + +     +    N++DL + F     +    + V+    + G EDF +  +  PG+ F+LG+
Sbjct:  218 DPLDSAVITIGTITGGSAQNIIAQEARLEGTIRTLSPASMEQVKKRIEAMVRGLETAYQCSGKVSYPAA----YYQVCNSSDLVEDFMQFVSENGLAEVVRSKEAMTG-EDFGYMLKKYPGFMFWLGV 340
The following BLAST results are available for this feature:
BLAST of CN185869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
DAPL_BACLD7.749e-1131.25Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185869 ID=CN185869; Name=CN185869; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTCCGATAGAAATGTTATTCGCAATGCCTCAATTA
TTTCCAAAATTATTTTGTCTTGATACATTGACGAATGTTAACTTATTTCC
CACCTAACTGAAAATCAATAAGATGTTCTTCCTTGAATCAAACTTGTATA
ACAGGACATTCTGGTAACATTTACACCAGTACTGGATTCCATAGTCATTG
ATAAGCAAGTCAACAGTACCTTACAGTTCATCGCGGTAGTTTCCCTCTGG
CAAAGAAATTTCTGGTCCAAACTCAAGAAGATACCTTAAAGCAAGTGATG
CATGAAGTGCGGCTCCATAAGGAAGTGCATCTTCATTGAGTGTGAAGTAG
GGGGAGTGTGTAGATTCAACCTTCCCAAGTGTCTCATTCTTCATCCCTAG
GAAGAAGAAGTATCCAGGCATTACTTCTTGGTAAAATGAGAAATCTTCAG
ATCCCATCACTGGTGCCATAACCTTAACTTTTTGAGTATCAAGCATATCT
CCAGCAACAGTTTGGAAGTACTTGTGCAAATCGTTATTGTTTATGGTGGG
AGGGAAAAAGGGTTTCTCTTTTGACAGGAAATCAACAGTTGCACTGCATC
TCTGTACTGCAGCTTGCCCAATGATAACCTCCTCAATACGTTGCTTTAGT
TGCGTGAAGCTTTCCTTTGAAAAGGCCCGGAAAGTGCCTCCAATTAATAC
TGAATCTGGAATGACATTGAATGCACCACCTCCTTGAAATTTTGCAACTG
TCACGACCTGTGAATCAAGTGGATCAGCTTC
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