DC900064

Overview
NameDC900064
Unique NameDC900064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900064_ssr40 microsatellite DC900064_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANCP (Adenylate kinase OS=Xanthomonas campestris pv. campestris GN=adk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.785e-21
Identity = 52/138 (37.68%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.1946 bits (82), Expect = 1.785e-21
Identity = 13/39 (33.33%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANC8 (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=adk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.785e-21
Identity = 52/138 (37.68%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.1946 bits (82), Expect = 1.785e-21
Identity = 13/39 (33.33%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANCB (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=adk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.021e-21
Identity = 52/138 (37.68%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGVKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 35.039 bits (79), Expect = 3.021e-21
Identity = 13/39 (33.33%), Postives = 25/39 (64.10%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV   +
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLKRI 181          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANC5 (Adenylate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.112e-21
Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.1946 bits (82), Expect = 5.112e-21
Identity = 13/39 (33.33%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANAC (Adenylate kinase OS=Xanthomonas axonopodis pv. citri GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.112e-21
Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.1946 bits (82), Expect = 5.112e-21
Identity = 13/39 (33.33%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANOR (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.651e-21
Identity = 51/138 (36.96%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.965 bits (84), Expect = 6.651e-21
Identity = 13/40 (32.50%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 705
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + ++
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLTRVDGVGSLDEVLERIR 182          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_XANOM (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.651e-21
Identity = 51/138 (36.96%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRE 587
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRK 143          

HSP 2 Score: 36.965 bits (84), Expect = 6.651e-21
Identity = 13/40 (32.50%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 705
            KR +V+ +S+ PV+ +YE +GK+ ++D    + EV + ++
Sbjct:  143 KRLQVYTDSTAPVIGFYEQRGKLTRVDGVGSLDEVLERIR 182          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_STRAW (Adenylate kinase OS=Streptomyces avermitilis GN=adk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.604e-21
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRNQGRED 563
            +G PG+GKGTQ A + ++ G  H+S GDL RA I   +E G + ++ + EG +VP EVTI + +  ME+    + FL+DGFPRN +   A + + K E    + VL  +  E+E+ +RI  R   R D
Sbjct:    6 VGPPGAGKGTQAAFLAKNLGIPHISTGDLFRANISQQTELGKLAKSYMDEGNLVPDEVTIAMAKDRMEQPDAVNGFLLDGFPRNVKQAEALDEMLKSEGMKLDAVLDLEVPEDEVVKRIAGRRICRND 133          

HSP 2 Score: 31.5722 bits (70), Expect = 8.604e-21
Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV----FDAVK 705
            +R +V+   + P++ YY A+G V  I A  PV EV     DA+K
Sbjct:  171 RRLEVYHTQTEPIIDYYRAQGLVVTISALGPVEEVTQRAMDALK 214          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_AQUAE (Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.623e-21
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  R    E   V  ++
Sbjct:    6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVK 137          

HSP 2 Score: 44.2838 bits (103), Expect = 8.623e-21
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 711
            KR +V+ E + P+++YY+ KG +R IDA+KPV EV+  V  V
Sbjct:  160 KRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEV 201          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BACV8 (Adenylate kinase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=adk PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.158e-20
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTKI------EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRE 587
            G PGSGKGTQ   IVE FG  H+S GD+LRAEIK G+E G   +  I +G+++P E+ I +L   ++     K +I DGFPR     A  EA+ K+      E   +L  D  EEE+  R++ R Q  GR DDN ETI++
Sbjct:    8 GAPGSGKGTQSERIVEKFGINHISTGDVLRAEIKKGTELGKTAKGYIDQGQLLPDELIIDILASTLDSFKESKGVIFDGFPR---TIAQAEALKKMLAERGQEVSVMLDLDVPEEELMTRLIKRGQESGRADDNEETIKK 144          
The following BLAST results are available for this feature:
BLAST of DC900064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_XANCP1.785e-2137.68Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC81.785e-2137.68Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANCB3.021e-2137.68Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC55.112e-2137.68Adenylate kinase OS=Xanthomonas campestris pv. ves... [more]
KAD_XANAC5.112e-2137.68Adenylate kinase OS=Xanthomonas axonopodis pv. cit... [more]
KAD_XANOR6.651e-2136.96Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_XANOM6.651e-2136.96Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_STRAW8.604e-2139.06Adenylate kinase OS=Streptomyces avermitilis GN=ad... [more]
KAD_AQUAE8.623e-2129.10Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 S... [more]
KAD_BACV81.158e-2043.57Adenylate kinase OS=Bacteroides vulgatus (strain A... [more]

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Properties
Property NameValue
Genbank descriptionDC900064 VSS Citrus sinensis cDNA clone VS27Q69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900064 ID=DC900064; Name=DC900064; organism=Citrus sinensis; type=EST; length=970bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTAGGGAAGCGGTTTAAGGTT
TTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAA
AGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTG
TTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTC
TCTGTCCAGAGTATCAGATTTAATATTAAGGTGGTGGTATTGTTGTTGGC
TGCTGCCTATTANTGTACTTTATTATTATGAGGTTATTATGCCACATGTT
TTACTAGAATGTCATAGAAGTTCATAGTGTATCATGATATTTATTCTTGT
TTGCCTATGTATTCTTGTTATTGAGACTGTAATAGCAAGATCAAGAGTAA
TAATAACAGCATTGATGCTT
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