DC900064

Overview
NameDC900064
Unique NameDC900064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900064_ssr40 microsatellite DC900064_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_LEPBP (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=adk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.824e-19
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIR 584
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI+
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIK 143          

HSP 2 Score: 25.409 bits (54), Expect = 9.824e-19
Identity = 9/38 (23.68%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            R   +   +LP++ +Y+A G +R+I+    + E+ + +
Sbjct:  145 RLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_LEPBA (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=adk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.824e-19
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIR 584
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI+
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIK 143          

HSP 2 Score: 25.409 bits (54), Expect = 9.824e-19
Identity = 9/38 (23.68%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            R   +   +LP++ +Y+A G +R+I+    + E+ + +
Sbjct:  145 RLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROWI (Adenylate kinase 2, mitochondrial OS=Drosophila willistoni GN=Adk2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.266e-18
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E F   HLS GD+LRAEI SGS+ G  ++ ++ EGK+V  E+ + ++   +++    + FL+DGFPR        + +    K   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDEGKLVSDELVVNMIDSNLDKPECKNGFLLDGFPRTVVQAQKLDTLLDKRKTNLDAVVEFSIDDNLLVRRITGR 145          

HSP 2 Score: 34.6538 bits (78), Expect = 1.266e-18
Identity = 15/45 (33.33%), Postives = 28/45 (62.22%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 714
            L KR + + + + P+V YY  +G   K+DAA+  ++VF  + ++F
Sbjct:  186 LKKRLESYHKQTKPLVDYYGFRGLHFKVDAARKSSDVFSKIDSIF 230          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROPS (Adenylate kinase 2, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=Adk2 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.266e-18
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E +   HLS GD+LRAEI SGS+ GT ++ ++  GK+V  E+ + ++   +++    + FL+DGFPR        +++    K   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEISSGSKLGTELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDSLLDKRKANLDAVIEFAIDDSLLVRRITGR 145          

HSP 2 Score: 36.5798 bits (83), Expect = 1.266e-18
Identity = 15/45 (33.33%), Postives = 29/45 (64.44%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 714
            L KR + + + + P+V YY  +G   K+DAA+  ++VF  ++++F
Sbjct:  186 LKKRLESYHKQTRPLVDYYGLRGLHYKVDAARKSSDVFSTIESIF 230          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROVI (Adenylate kinase 2, mitochondrial OS=Drosophila virilis GN=Adk2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.266e-18
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + + F   HLS GD+LRAEI SGS+ G  ++ ++ EGK+V  ++ + ++   +++    + FL+DGFPR        + +    +   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLQKKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDEGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAQKLDTLLDKRRTSLDAVIEFAIDDNLLVRRITGR 145          

HSP 2 Score: 39.2762 bits (90), Expect = 1.266e-18
Identity = 17/48 (35.42%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 723
            L KR + + + + P+V YY  +G   K+DAAK  ++VF ++ ++F  K
Sbjct:  186 LKKRLEAYHKQTKPLVDYYGLRGLHFKVDAAKKASDVFSSIDSIFQRK 233          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_SYNPW (Adenylate kinase OS=Synechococcus sp. (strain WH7803) GN=adk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.278e-18
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            +G PG+GKGTQ + + E  G  HLS GDLLR+E+ +GS  G   + ++  G++V  ++ + +++  +       +L+DGFPRN     A E +    +   E V+  +  +E +  R+L R  GR DDN   IR
Sbjct:    8 IGPPGAGKGTQASRLCETHGLRHLSTGDLLRSEVSAGSALGQEAEAVMNRGELVSDDLVLAIVRSQLTALNGQGWLLDGFPRNVAQAEALEPLLGELQQSIETVVLLELDDEVLVERLLAR--GRADDNESVIR 139          

HSP 2 Score: 29.261 bits (64), Expect = 1.278e-18
Identity = 11/40 (27.50%), Postives = 24/40 (60.00%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 708
            R +V+ + + P++ YY+A+G +  +DA   V  +   ++A
Sbjct:  141 RLEVYRQQTAPLIDYYQARGLLISVDAQGSVEAITTRLEA 180          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_CORU7 (Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.415e-18
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ   + +     H+S GDL RA I  G+E G   Q  +  GK+VP+EVT  +++  +EE+   + FL+DGFPR  E     E + K   ++ + V+ +  SE+ +  R+L+R  GR DDN  TIR
Sbjct:    6 LGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVPTEVTANMVRARLEEADAANGFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSEDVVVERMLSR--GRNDDNESTIR 138          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_CAMFF (Adenylate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=adk PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.415e-18
Identity = 51/131 (38.93%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 569
            +G PGSGK T  + I  +   + H S GDLLRAE+ SGSE G +I + I +G +VP EV +  +  A+  S  +  LIDG+PR+EE     + V    ++++ + V+  D SEE    R+L R +G +D+N
Sbjct:    8 IGAPGSGKTTDASMIAANDDKFAHYSTGDLLRAEVASGSELGKLIDSFISKGNLVPLEVVVNTIISAIRSSDKNYILIDGYPRSEEQMRELDRVLASQSEVKLDGVIEVDVSEEVARNRVLGRARGADDNN 138          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_ALKOO (Adenylate kinase OS=Alkaliphilus oremlandii (strain OhILAs) GN=adk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-18
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGRE 560
            LG PG+GKGTQ A+IVE +   H+S GD+ R  IK G+E G   ++ + +G +VP EV +++++ +  +E   + FL+DGFPR      A +       I  + V+     +E +  R + R   RE
Sbjct:    6 LGPPGAGKGTQAASIVEKYHIPHISTGDIFRYNIKQGTELGKKAKSYMDQGLLVPDEVVVEIVEDRLKKEDCENGFLLDGFPRTVVQAEALDKALVDMNISLDKVINIQVDKERLIERAVGRRICRE 132          

HSP 2 Score: 35.039 bits (79), Expect = 1.652e-18
Identity = 14/36 (38.89%), Postives = 24/36 (66.67%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 693
            +R +V+L  + P+V+YY ++ K+  ID  K + EVF
Sbjct:  170 RRIEVYLSETTPLVEYYSSQNKLVTIDGDKKINEVF 205          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_CORA7 (Adenylate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=adk PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.849e-18
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   ++ I  GK+VP++VT ++++  + ++   D FL+DGFPR  +     E +     ++ + VL F+ SE+ +  R+L R  GR DD  ETIR
Sbjct:    6 LGPPGAGKGTQAALLSEKLGVPHISTGDLFRANIGEGTPLGLEAKSYIDAGKLVPTDVTARMVEDRLNQDDAKDGFLLDGFPRTVQQADILEKLLSDKDLKLDGVLNFEVSEDVVVERMLAR--GRADDTEETIR 138          
The following BLAST results are available for this feature:
BLAST of DC900064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_LEPBP9.824e-1936.50Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD_LEPBA9.824e-1936.50Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD2_DROWI1.266e-1836.89Adenylate kinase 2, mitochondrial OS=Drosophila wi... [more]
KAD2_DROPS1.266e-1836.07Adenylate kinase 2, mitochondrial OS=Drosophila ps... [more]
KAD2_DROVI1.266e-1834.43Adenylate kinase 2, mitochondrial OS=Drosophila vi... [more]
KAD_SYNPW1.278e-1834.33Adenylate kinase OS=Synechococcus sp. (strain WH78... [more]
KAD_CORU71.415e-1840.00Adenylate kinase OS=Corynebacterium urealyticum (s... [more]
KAD_CAMFF1.415e-1838.93Adenylate kinase OS=Campylobacter fetus subsp. fet... [more]
KAD_ALKOO1.652e-1834.65Adenylate kinase OS=Alkaliphilus oremlandii (strai... [more]
KAD_CORA71.849e-1840.00Adenylate kinase OS=Corynebacterium aurimucosum (s... [more]

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Properties
Property NameValue
Genbank descriptionDC900064 VSS Citrus sinensis cDNA clone VS27Q69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900064 ID=DC900064; Name=DC900064; organism=Citrus sinensis; type=EST; length=970bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTAGGGAAGCGGTTTAAGGTT
TTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAA
AGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTG
TTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTC
TCTGTCCAGAGTATCAGATTTAATATTAAGGTGGTGGTATTGTTGTTGGC
TGCTGCCTATTANTGTACTTTATTATTATGAGGTTATTATGCCACATGTT
TTACTAGAATGTCATAGAAGTTCATAGTGTATCATGATATTTATTCTTGT
TTGCCTATGTATTCTTGTTATTGAGACTGTAATAGCAAGATCAAGAGTAA
TAATAACAGCATTGATGCTT
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