DC900064

Overview
NameDC900064
Unique NameDC900064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900064_ssr40 microsatellite DC900064_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROME (Adenylate kinase 2, mitochondrial OS=Drosophila melanogaster GN=Adk2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.141e-18
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E F   HLS GD+LRAEI SGS+ G  ++ ++  GK+V  ++ + ++   +++    + FL+DGFPR        + +    K   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTNLDAVIEFAIDDSLLVRRITGR 145          

HSP 2 Score: 38.1206 bits (87), Expect = 2.141e-18
Identity = 17/48 (35.42%), Postives = 29/48 (60.42%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 723
            L KR + + + + P+V YY  +G   K+DAAK  ++VF  + ++F  K
Sbjct:  186 LKKRLEAYHKQTKPLVDYYGLRGLHFKVDAAKKSSDVFSTIDSIFQRK 233          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROGR (Adenylate kinase 2, mitochondrial OS=Drosophila grimshawi GN=Adk2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.142e-18
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E F   HLS GD+LRAEI SGS+ G+ ++ ++  GK+V  ++ + ++   +++    + FL+DGFPR        + +    K   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASGSKLGSDLKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKTHLDAVIEFAIDDNLLVRRITGR 145          

HSP 2 Score: 38.5058 bits (88), Expect = 2.142e-18
Identity = 17/48 (35.42%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 723
            L KR + + + + P+V YY  +G   K+DAAK  ++VF ++ ++F  K
Sbjct:  186 LKKRLESYHKQTKPLVDYYGLRGLHFKVDAAKKASDVFSSIDSIFLRK 233          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_HELMI (Adenylate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=adk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.149e-18
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGRE 560
            +G PG+GKGTQ   +V  F   H+S GD+ RA IK+ +E G   +  +  G++VP EVTI ++++ + ++     FL+DGFPR      A E   K   +E + V+      E +  R+  R   R+
Sbjct:    6 MGPPGAGKGTQAEMLVSRFAIPHISTGDMFRAAIKNETELGRKAKAFMDAGQLVPDEVTIGIVRERLAQDDCRQGFLLDGFPRTVPQADALEETLKELGLELDAVIDIHVPRERLIERLTGRRICRQ 132          

HSP 2 Score: 37.3502 bits (85), Expect = 2.149e-18
Identity = 15/40 (37.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 708
            R  V+   + P+++YYEAKG+ ++ID  + +A VF  + A
Sbjct:  171 RLDVYTRQTQPLIEYYEAKGRYKRIDGEQDMAAVFKDICA 210          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_DESRM (Adenylate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=adk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.150e-18
Identity = 42/122 (34.43%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR 545
            +G PG+GKGTQ   +V+    TH+S GD+ RA IK G+E G   +  + +G +VP EV I +++  + ++   + FL+DGFPR  E  +A +A  +   I+ + V+  +   E++  R+  R
Sbjct:    6 MGPPGAGKGTQAEVLVKELKITHISTGDMFRAAIKEGTEMGKKAKEYMDKGALVPDEVVIGMVKDRLSQADCKEGFLLDGFPRTVEQASALDATLQDLGIKLDAVINIEVPLEKLMARLTGR 127          

HSP 2 Score: 34.2686 bits (77), Expect = 2.150e-18
Identity = 12/41 (29.27%), Postives = 26/41 (63.41%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            +G R   ++E + P++ YYEAKG ++ I+  + ++ V + +
Sbjct:  168 VGTRLNAYIEKTKPLIDYYEAKGILKNINGDQEISAVLNDI 208          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_SYNJB (Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.806e-18
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDD 566
            LG PG+GKGTQ   +   +    +S GDLLRAE+K+ +  G   +  +  G++VP EV I +++  +++S    +++DGFPR      A E + +    + ++VL  +  +E +  R+L R   QGR DD
Sbjct:    7 LGPPGAGKGTQAERLAAIYHTPKISTGDLLRAEVKAQTPLGCQAKVYMDAGELVPDEVLIGMVKGQLQQSPEQGWILDGFPRTLAQAEALEELLQELGQDYDYVLNLEVPDEVVVARLLARGKEQGRSDD 136          

HSP 2 Score: 36.5798 bits (83), Expect = 2.806e-18
Identity = 12/42 (28.57%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 711
            KR +V+ + + P++ +YEAKG++++++  +P+  V + ++A+
Sbjct:  144 KRLEVYRQQTAPLIDFYEAKGRLQRVNGNQPMESVQEHLQAL 185          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_CAMC1 (Adenylate kinase OS=Campylobacter concisus (strain 13826) GN=adk PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.153e-18
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDN 569
            +G PGSGK T  + I +H   + H S GDLLRAE+ SGSE G +I   I +G +VP +V +  +  A++ S     +IDG+PR+ E     + V   + E     V+  D SE+    R+L R +G +D+N
Sbjct:    8 IGAPGSGKTTDASLIAQHDEKFAHFSTGDLLRAEVASGSELGKLIDGFISKGNLVPLDVVVNAIVSAIKSSNKSNIIIDGYPRSVEQMTELDKVLSEQDEISLKGVIEVDVSEDVARARVLGRARGADDNN 138          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_PROM4 (Adenylate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.654e-18
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ   + E+ G  HLS GDLLRAE+ + S  G     ++ +G++V  E+ + ++QK +       +L+DGFPRN     + + + +   +P + VL  +  +E + +R+L+R  GR DD  E IR
Sbjct:    8 LGPPGAGKGTQAKLLCENQGLIHLSTGDLLRAEVNAQSPLGKEAALIMNKGELVSDEIVLSIVQKRLSADAKSGWLLDGFPRNLIQAQSLQQLLENVSQPIQAVLLIELDDETLIKRLLSR--GRSDDTQEVIR 139          

HSP 2 Score: 25.409 bits (54), Expect = 3.654e-18
Identity = 11/34 (32.35%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 690
            R +V+ E + P+V +Y++ G + KI     V +V
Sbjct:  141 RLEVYREKTAPLVDFYQSLGILVKIQGEGDVKDV 174          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BRAHW (Adenylate kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=adk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.656e-18
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            +G PG GKGTQ A I + +  +H++ GD+LR  I +G+E G   ++ + +G++VP  + I +L+ +  ++   + F++DGFPR  E       + +    +   V+    SEE +  R+L R  GR DDN ETI+
Sbjct:    7 IGAPGVGKGTQSALIEKDYSISHIATGDMLRENIANGTELGKTAKSYMDKGELVPDSLVIDMLKDRIKKDDCKNGFMLDGFPRTIEQAKELSNILESLNYKISAVIDIFASEEIIIDRLLKR--GRADDNEETIK 139          

HSP 2 Score: 33.4982 bits (75), Expect = 3.656e-18
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 705
            R KVF   S PV+ YY  K K+ KI++     EV+  +K
Sbjct:  141 RLKVFENQSKPVLDYYSDKAKIIKIESIGTPEEVYAKIK 179          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_DROAN (Adenylate kinase 2, mitochondrial OS=Drosophila ananassae GN=Adk2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.708e-18
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E F   HLS GD+LRAEI SGS+ G  ++ ++  GK+V  ++ + ++   +++    + FL+DGFPR        + +    K   + V+ F   +  + RRI  R
Sbjct:   24 LGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDKRKANLDAVIEFAIDDSLLVRRITGR 145          

HSP 2 Score: 36.965 bits (84), Expect = 4.708e-18
Identity = 16/45 (35.56%), Postives = 27/45 (60.00%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 714
            L KR + + + + P+V YY  +G   K+DAAK  ++VF  +  +F
Sbjct:  186 LKKRLEAYHKQTRPLVDYYGLRGLHFKVDAAKKSSDVFSTIDTIF 230          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_STRSV (Adenylate kinase OS=Streptococcus sanguinis (strain SK36) GN=adk PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.149e-18
Identity = 54/169 (31.95%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIR 584
            +G PG+GKGTQ A IV+HF   H+S GD+ RA I + +E G + ++ I +G++VP EVT      +L Q  ++E+G   FL+DG+PR  E   A +                +++P  +L      E +  RI++R  G                    REDD  ET++
Sbjct:    6 MGLPGAGKGTQAAKIVDHFNVAHISTGDMFRAAIANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQNDIKETG---FLLDGYPRTIEQAHALDQTLTELDLALDGVINIEVDPNSLL------ERLSGRIIHRETGETFHKVFNPPADYKEEDYYQREDDKPETVK 165          

HSP 2 Score: 31.5722 bits (70), Expect = 6.149e-18
Identity = 13/44 (29.55%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  586 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 717
            +R  V +    P++ +Y  KG V  I   + + +VF A++ V T
Sbjct:  166 RRLDVNIAQGQPIIDHYRRKGLVHDIQGNQDINDVFSAIEKVLT 209          
The following BLAST results are available for this feature:
BLAST of DC900064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD2_DROME2.141e-1835.25Adenylate kinase 2, mitochondrial OS=Drosophila me... [more]
KAD2_DROGR2.142e-1835.25Adenylate kinase 2, mitochondrial OS=Drosophila gr... [more]
KAD_HELMI2.149e-1833.86Adenylate kinase OS=Heliobacterium modesticaldum (... [more]
KAD_DESRM2.150e-1834.43Adenylate kinase OS=Desulfotomaculum reducens (str... [more]
KAD_SYNJB2.806e-1833.85Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 ... [more]
KAD_CAMC13.153e-1837.40Adenylate kinase OS=Campylobacter concisus (strain... [more]
KAD_PROM43.654e-1836.57Adenylate kinase OS=Prochlorococcus marinus (strai... [more]
KAD_BRAHW3.656e-1834.07Adenylate kinase OS=Brachyspira hyodysenteriae (st... [more]
KAD2_DROAN4.708e-1835.25Adenylate kinase 2, mitochondrial OS=Drosophila an... [more]
KAD_STRSV6.149e-1831.95Adenylate kinase OS=Streptococcus sanguinis (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC900064 VSS Citrus sinensis cDNA clone VS27Q69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900064 ID=DC900064; Name=DC900064; organism=Citrus sinensis; type=EST; length=970bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTAGGGAAGCGGTTTAAGGTT
TTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAA
AGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTG
TTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTC
TCTGTCCAGAGTATCAGATTTAATATTAAGGTGGTGGTATTGTTGTTGGC
TGCTGCCTATTANTGTACTTTATTATTATGAGGTTATTATGCCACATGTT
TTACTAGAATGTCATAGAAGTTCATAGTGTATCATGATATTTATTCTTGT
TTGCCTATGTATTCTTGTTATTGAGACTGTAATAGCAAGATCAAGAGTAA
TAATAACAGCATTGATGCTT
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