DC900064

Overview
NameDC900064
Unique NameDC900064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900064_ssr40 microsatellite DC900064_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KADC2_ARATH (Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.025e-18
Identity = 43/119 (36.13%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            G P SGKGTQC  I   +G  H+SAGDLLRAEI SGSENG   +  +++G++VP E+ + +++  + ++ +++  +L+DG+PR+     A +     +P+  +  +  EE +  R++ R
Sbjct:   71 GAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATALKGF-GFQPDLFIVLEVPEEILIERVVGR 188          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_KOSOT (Adenylate kinase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=adk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.991e-18
Identity = 39/122 (31.97%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I   +G  H+S GD+LR  + +G+E G  ++ +I++G +VP ++ + +++  +++  + K F++DGFPR  +   +   +      E + V+  D  EE +  RI +R
Sbjct:    6 LGPPGAGKGTQAKKIAMRYGIPHISTGDMLREAVAAGTELGKKVKEIIEKGLLVPDDLMVAIVEDRLKKPDSAKGFILDGFPRTVQQAESLSGILGNLGKELDAVILIDAPEEVVVERISSR 127          

HSP 2 Score: 32.7278 bits (73), Expect = 7.991e-18
Identity = 14/50 (28.00%), Postives = 29/50 (58.00%), Query Frame = 1
Query:  553 EEKMITLRQLGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 702
            ++K  T+R+   R++V++E + PV+ YY   G +  ID +  +  V + +
Sbjct:  162 DDKPATVRE---RYRVYMEKTAPVINYYSEHGSLITIDGSLDIEAVTEEI 208          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_ELUMP (Adenylate kinase OS=Elusimicrobium minutum (strain Pei191) GN=adk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.039e-17
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ   + E +G  H+S GDLLR EI + +E G   + +I  G +VP E+ + LL+ A    G    ++DGFPR          + K   E    V+    SE+E+ +RI+ R Q +   N+  +R
Sbjct:    6 LGAPGAGKGTQSVLVAEKYGLKHISTGDLLREEIANNTELGKQAKKLIDGGNLVPDEMILGLLKNAFLNRGKG-VVLDGFPRTLSQAEMMHPIVKGLAEKLSAVINIKLSEDEITQRIVLRRQCKNCGNIFNLR 138          

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-17
Identity = 13/45 (28.89%), Postives = 23/45 (51.11%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 723
            R  V+   + PVV +Y+ K   +++D +K   EVF+ +      K
Sbjct:  169 RINVYHSQTEPVVGFYKNKTYYKEVDGSKNKEEVFEEISKFINRK 213          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_CORK4 (Adenylate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=adk PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.045e-17
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 584
            LG PG+GKGTQ A + +  G  H+S GDL R  I + +E G   ++ I  GK+VP+ VT+ +++ +  ++   D FL+DGFPR  E     + +     TK++   VL FD SE+ +  R+L R  GR DD  E IR
Sbjct:    6 LGPPGAGKGTQAAILSDKLGVPHVSTGDLFRENIGNNTELGQEAKSYIDAGKLVPTSVTVNMVKDRLSQDDAADGFLLDGFPRTVEQGDELKNILDGLGTKLDA--VLQFDVSEDVVVERMLAR--GRADDTEEVIR 138          

HSP 2 Score: 22.3274 bits (46), Expect = 1.045e-17
Identity = 13/45 (28.89%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  589 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV----FDAVKAV 711
            R KV+ + + P+++YY  K  + +I A   V ++     +A+KA+
Sbjct:  140 RLKVYRDETAPLLEYY--KDSIIRIVAEGSVEDINERTMEALKAL 182          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_METAC (Adenylate kinase OS=Methanosarcina acetivorans GN=adk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.351e-17
Identity = 42/121 (34.71%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV-TKIEP--EFVLFFDCSEEEMERRILNR 545
            G PG+GKGTQ   +V+ +G   +S GD+LRA ++ G+E G   +  + +G++VP +V I +++  + E+  +K F++DG+PR      A EA+  +IE   + VL  +  +E +  RI  R
Sbjct:    7 GPPGAGKGTQAKKLVDFYGIPQISTGDILRANVREGTELGLAAKAYMDKGELVPDQVLIGIIKNRLNEADCEKGFILDGYPRTVPQADALEAILDEIEKPIDVVLNLEVPDEVLVGRISGR 127          

HSP 2 Score: 33.4982 bits (75), Expect = 1.351e-17
Identity = 14/48 (29.17%), Postives = 27/48 (56.25%), Query Frame = 1
Query:  568 TLRQLGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 711
            T   +  R  V+ + + P++ YY+ KG +  +D  K +  VF+ +KA+
Sbjct:  163 TAEAVQNRLDVYKKQTQPLINYYKEKGILVTLDGTKEIDVVFEDLKAI 210          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_LEUCK (Adenylate kinase OS=Leuconostoc citreum (strain KM20) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.358e-17
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 581
            LG PG+GKGTQ   IV+ +   H+S GD+ RA + + +  G   +  +  G +VP E+T  ++   + +     + F++DG+PRNE      +   A         L+F+ S+  +  R+L R  GR DD  E I
Sbjct:    8 LGLPGAGKGTQAEFIVKDYPTVHISTGDIFRANLANDTSLGKQAREYMDAGNLVPDEITNAMVADRLNQDDVQANGFMLDGYPRNEAQAEFLDHYLAENNSAVSATLYFEVSDSLLRERLLGR--GRADDTPEVI 140          

HSP 2 Score: 36.1946 bits (82), Expect = 1.358e-17
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 711
            +  R +V   ++LP+V YY+  G +  ID  + +AEV+  VKAV
Sbjct:  140 IDNRLEVNKAANLPLVDYYKRAGVLHTIDGGRELAEVYHDVKAV 183          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_THEEB (Adenylate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=adk PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.565e-17
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR------NQGREDDNVETI 581
            GGPGSGKGTQ A +    G  H+S GD+LRAE  +G+  G   Q+ +  G++VP +V + ++   +++      +L+DGFPRN    A FE + K    + +++LF D     ++ R LNR       Q R DD  ETI
Sbjct:    7 GGPGSGKGTQAAILTTLLGIPHISTGDILRAERAAGTLLGQQAQSYMDRGELVPDQVIVDMVANRLQQPDTAAGWLLDGFPRNGAQAAVFEEMLKSIHQDYDYLLFLDVPAAILQERALNRAKQAVNGQQRSDDTPETI 145          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_ENTHI (Adenylate kinase OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.565e-17
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVE 575
            LGGPG+GKGTQCANI +H   + H+S GDLLRAEIK+ +E G  ++++I+ G++V  E+   ++   + ++  +  + DG+PR   +  A  +  T      V+  +  +E + +RI++R +  GR DDN E
Sbjct:    9 LGGPGAGKGTQCANIEKHLNSSAHISTGDLLRAEIKNKTEIGLKVEDIIRNGQLVSDEIICNMVNNFIAKNEKEVIVFDGYPRAVSQLEALLKEATAETKICVINLEIPDEILIQRIVSRGKTSGRADDNTE 140          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_AEDAE (Adenylate kinase 2, mitochondrial OS=Aedes aegypti GN=Adk2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.750e-17
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGTQ   + E F   HLS GD+LRAEI +GS+ G  ++ ++ EGK+V  ++ + ++   +++    + FL+DGFPR        + +    K   + V+ F   +  + RRI  R
Sbjct:   25 LGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIAAGSKLGAQLKKVMDEGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDDLLEKRKTGLDAVVEFGIDDSLLVRRITGR 146          

HSP 2 Score: 35.039 bits (79), Expect = 1.750e-17
Identity = 14/46 (30.43%), Postives = 28/46 (60.87%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 717
            L KR + + + + P+  YY  +G   ++DAA+  + VF+ + ++FT
Sbjct:  187 LVKRLEAYHKQTKPLADYYALRGLHFRVDAAQSASRVFENIDSIFT 232          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_THEPX (Adenylate kinase OS=Thermoanaerobacter sp. (strain X514) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.756e-17
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I + F   H+S GD+ R  ++  ++ G + +  + +G +VP EVT K+++  +E+    K FL+DG+PRN    E    F     I  + VL  +   E +  RI  R
Sbjct:    6 LGPPGAGKGTQAVKIAKEFDIPHISTGDIFRQNLRDNTDLGKLAKEYMDKGLLVPDEVTNKIVEDRLEKDDCQKGFLLDGYPRNVAQAEELDRFLHDKGIHLDCVLNIEVDREALIERITGR 127          

HSP 2 Score: 35.8094 bits (81), Expect = 1.756e-17
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  571 LRQLGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 705
            L  + KR +V+   + P+++YY  K  +  ID  K V EVF+ +K
Sbjct:  165 LESVVKRLEVYESQTKPLIEYYTKKNTLVNIDGNKSVEEVFEDIK 209          
The following BLAST results are available for this feature:
BLAST of DC900064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KADC2_ARATH7.025e-1836.13Probable adenylate kinase 2, chloroplastic OS=Arab... [more]
KAD_KOSOT7.991e-1831.97Adenylate kinase OS=Kosmotoga olearia (strain TBF ... [more]
KAD_ELUMP1.039e-1735.82Adenylate kinase OS=Elusimicrobium minutum (strain... [more]
KAD_CORK41.045e-1739.42Adenylate kinase OS=Corynebacterium kroppenstedtii... [more]
KAD_METAC1.351e-1734.71Adenylate kinase OS=Methanosarcina acetivorans GN=... [more]
KAD_LEUCK1.358e-1731.85Adenylate kinase OS=Leuconostoc citreum (strain KM... [more]
KAD_THEEB1.565e-1737.41Adenylate kinase OS=Thermosynechococcus elongatus ... [more]
KAD_ENTHI1.565e-1737.12Adenylate kinase OS=Entamoeba histolytica PE=3 SV=... [more]
KAD2_AEDAE1.750e-1735.25Adenylate kinase 2, mitochondrial OS=Aedes aegypti... [more]
KAD_THEPX1.756e-1734.43Adenylate kinase OS=Thermoanaerobacter sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900064 VSS Citrus sinensis cDNA clone VS27Q69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900064 ID=DC900064; Name=DC900064; organism=Citrus sinensis; type=EST; length=970bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTAGGGAAGCGGTTTAAGGTT
TTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAA
AGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTG
TTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTC
TCTGTCCAGAGTATCAGATTTAATATTAAGGTGGTGGTATTGTTGTTGGC
TGCTGCCTATTANTGTACTTTATTATTATGAGGTTATTATGCCACATGTT
TTACTAGAATGTCATAGAAGTTCATAGTGTATCATGATATTTATTCTTGT
TTGCCTATGTATTCTTGTTATTGAGACTGTAATAGCAAGATCAAGAGTAA
TAATAACAGCATTGATGCTT
back to top