DC900062
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.276e-30 Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 2 Query: 137 MSGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 385 MS R S +Y GNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAHGG Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 9.554e-22 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2 Query: 161 IYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGP 400 +Y GNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE G RGP Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGP 89
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 96
BLAST of DC900062 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21 Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 140 SGRFSXXIYXGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG 397 +G IY GNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE G G G Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGG 95 The following BLAST results are available for this feature:
BLAST of DC900062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900062 ID=DC900062; Name=DC900062; organism=Citrus sinensis; type=EST; length=403bpback to top |