CN185852

Overview
NameCN185852
Unique NameCN185852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:153..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21B_YEAST (40S ribosomal protein S21-B OS=Saccharomyces cerevisiae GN=RPS21B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 38/74 (51.35%), Postives = 59/74 (79.73%), Query Frame = -2
Query:  258 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQ 476
            M+N++GQ ++LY+PRKCSATNR+I + DHA+VQIN+  VD +G    G++ T+AL G+VR++G+ D +++RL Q
Sbjct:    1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYITYALSGYVRSRGESDDSLNRLAQ 74          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21A_YEAST (40S ribosomal protein S21-A OS=Saccharomyces cerevisiae GN=RPS21A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 38/74 (51.35%), Postives = 59/74 (79.73%), Query Frame = -2
Query:  258 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQ 476
            M+N++GQ ++LY+PRKCSATNR+I + DHA+VQIN+  VD +G    G++ T+AL G+VR++G+ D +++RL Q
Sbjct:    1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQ 74          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_XENLA (40S ribosomal protein S21 OS=Xenopus laevis GN=rps21 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G +  Q+ T+A+CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSIMRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CANGA (40S ribosomal protein S21 OS=Candida glabrata GN=RPS21 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = -2
Query:  258 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQ 476
            M+N++GQ ++LYIPRKCSATNR+I + DHA+VQINI  VD +G    G++ T+AL G VRA+G+ D +++RL Q
Sbjct:    1 MENDKGQLVELYIPRKCSATNRIIKADDHASVQINIAKVDEEGRAIPGEYITYALSGNVRARGESDDSLNRLAQ 74          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_XENTR (40S ribosomal protein S21 OS=Xenopus tropicalis GN=rps21 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.345e-16
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G +  Q+ T+A+CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_SUBDO (40S ribosomal protein S21 OS=Suberites domuncula GN=RPS21 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQNE G+ +D+YIPRKCSA+ R+I ++D+AAVQ+NI  VD   G  TG F T+A+ GF+RA G+ D  + R+
Sbjct:    1 MQNEAGETVDVYIPRKCSASGRIIGARDYAAVQLNIADVDEKTGRVTGGFKTYAVSGFIRAMGESDDCLHRI 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_IXOSC (40S ribosomal protein S21 OS=Ixodes scapularis GN=RpS21 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQNE G+ +DLYIPRKCS +NR+I +KDHA++QIN+  VD   G  TG+   +A+CG +R  G+ D  I RL
Sbjct:    1 MQNEAGEYVDLYIPRKCSTSNRIIHAKDHASIQINLAIVDEQSGRATGETKPYAICGAIRRMGESDDCITRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_NEUCR (40S ribosomal protein S21 OS=Neurospora crassa GN=rps-21 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N+ G+ +DLY+PRKCSAT R+I SKDH + QI I  VD +G    G+   +AL GFVRA G+ D +++RL Q+
Sbjct:    1 MENDRGEIVDLYVPRKCSATGRIIKSKDHGSCQITIAKVDENGRAIQGENIIYALSGFVRAMGESDDSLNRLAQR 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CERCA (40S ribosomal protein S21 OS=Ceratitis capitata GN=RpS21 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N+ G+++DLY PRKCSA+NR+I +KDHA+VQ+NI  VD + G  T    T+A+CG +R  G+ D  I RL +K
Sbjct:    1 MENDAGESVDLYCPRKCSASNRIIHAKDHASVQLNIVDVDPETGRMTVGSKTYAICGEIRRMGESDDCIVRLAKK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CAEBR (40S ribosomal protein S21 OS=Caenorhabditis briggsae GN=rps21 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = -2
Query:  231 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD--GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 476
            MQN+ GQ ++LY+PRKCS++NR+I  KDHAAVQI+   VD +   +  G+ + +A+CG +R  G+ D AI RL QK  +  R +
Sbjct:    1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAAVQIDFVDVDPETGRMIPGKSTRYAICGALRRMGESDDAILRLAQKDGLVPRDE 84          
The following BLAST results are available for this feature:
BLAST of CN185852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS21B_YEAST1.375e-1651.3540S ribosomal protein S21-B OS=Saccharomyces cerev... [more]
RS21A_YEAST1.375e-1651.3540S ribosomal protein S21-A OS=Saccharomyces cerev... [more]
RS21_XENLA1.796e-1652.7840S ribosomal protein S21 OS=Xenopus laevis GN=rps... [more]
RS21_CANGA1.796e-1655.4140S ribosomal protein S21 OS=Candida glabrata GN=R... [more]
RS21_XENTR2.345e-1652.7840S ribosomal protein S21 OS=Xenopus tropicalis GN... [more]
RS21_SUBDO1.985e-1552.7840S ribosomal protein S21 OS=Suberites domuncula G... [more]
RS21_IXOSC3.386e-1552.7840S ribosomal protein S21 OS=Ixodes scapularis GN=... [more]
RS21_NEUCR1.287e-1450.6740S ribosomal protein S21 OS=Neurospora crassa GN=... [more]
RS21_CERCA2.867e-1450.6740S ribosomal protein S21 OS=Ceratitis capitata GN... [more]
RS21_CAEBR3.744e-1446.4340S ribosomal protein S21 OS=Caenorhabditis briggs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185852 ID=CN185852; Name=CN185852; organism=Citrus sinensis; type=EST; length=546bp
GGCGGGGGAGCGCGTCGCCGTTTTTTTTAGCTGTAAGCAAATCATGACCA
TATATTAAGTTCGACAGATAAACAAACTAAGTGCTAATCATGGTCCAAAA
GCAGAAGTAAATTTCAACATGGTCCACATAAGTAAAACTAGAACAAACGA
ATCGTTGCAATCACATTCCAACCCTTACAGAAGAAGACAACTGCTAGAGA
AGACACATAACTTGCTTTAATGGAAAATTATTGTTGTCGGACCTCAACTT
TCTTCTTTTGCCAAAGCCTGTCAATGGCGCTGTCACCGTCACCCTGAGCA
CGGACGAAGCCGCAGAGAGCGAAAGTGGAGAATTGGCCAGTGTAAATGCC
ATCAGCATCAACGTGCCCGATGTTGATCTGGACAGCGGCGTGATCCTTGG
AGGTGATGAGCCTGTTTGTGGCGGAACACTTCCTGGGGATATAGAGATCC
ATGTTTTGACCCTCCTCGTTCTGCATCTTGGCTGAGTTTTTTTCTTTCTT
CTTTTTTTTCCTTCTTCTTCCTTTTGACGGCCGGAAATACTAGCCT
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