CN185852

Overview
NameCN185852
Unique NameCN185852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:153..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CAEEL (40S ribosomal protein S21 OS=Caenorhabditis elegans GN=rps-21 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD--GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            MQN+ GQ ++LY+PRKCS++NR+I  KDHA+VQI+   VD +   +  G+ + +A+CG +R  G+ D AI RL QK
Sbjct:    1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQK 76          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_AGRLI (40S ribosomal protein S21 OS=Agriotes lineatus GN=RpS21 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.427e-13
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGH-VDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N+ G+ +DLY PRKCSA+NR+I +KDHA++Q++I   V A G  T    ++ALCG +R  G+ D  I RL +K
Sbjct:    1 MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLSIAEVVPATGRMTENTKSYALCGAIRRMGESDDCIVRLTKK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_BIPLU (40S ribosomal protein S21 OS=Biphyllus lunatus GN=RpS21 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N+ G+ +DLY PRKCSA+NR+I +KDHA++Q+ +  VD   G  T    ++ALCG +R  G+ D  I RL +K
Sbjct:    1 MENDAGEFVDLYCPRKCSASNRIIHAKDHASIQLCVAEVDPQTGRMTDSTKSYALCGAIRRMGESDDCIVRLTKK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_PLUXY (40S ribosomal protein S21 OS=Plutella xylostella GN=RpS21 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  237 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVR 476
            MQN+ G+ +DLY PRKCSA+NRLI +KDHA+VQ+ I  VD A G        + +CG +R  G+ D  I RL +K  + V+
Sbjct:    1 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIRRMGESDDCIVRLTKKDGILVK 81          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_SPOFR (40S ribosomal protein S21 OS=Spodoptera frugiperda GN=RpS21 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            MQN+ G+ +DLY PRKCSA+NRLI +KDHA+VQ+ I  VD A G        + +CG +R  G+ D  I RL +K
Sbjct:    1 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_BOMMO (40S ribosomal protein S21 OS=Bombyx mori GN=RpS21 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            MQN+ G+ +DLY PRKCSA+NRLI +KDHA+VQ+ I  VD A G        + +CG +R  G+ D  I RL +K
Sbjct:    1 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75          
The following BLAST results are available for this feature:
BLAST of CN185852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS21_CAEEL6.386e-1448.6840S ribosomal protein S21 OS=Caenorhabditis elegan... [more]
RS21_AGRLI2.427e-1348.0040S ribosomal protein S21 OS=Agriotes lineatus GN=... [more]
RS21_BIPLU3.170e-1346.6740S ribosomal protein S21 OS=Biphyllus lunatus GN=... [more]
RS21_PLUXY5.406e-1346.9140S ribosomal protein S21 OS=Plutella xylostella G... [more]
RS21_SPOFR1.573e-1249.3340S ribosomal protein S21 OS=Spodoptera frugiperda... [more]
RS21_BOMMO1.573e-1249.3340S ribosomal protein S21 OS=Bombyx mori GN=RpS21 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185852 ID=CN185852; Name=CN185852; organism=Citrus sinensis; type=EST; length=546bp
GGCGGGGGAGCGCGTCGCCGTTTTTTTTAGCTGTAAGCAAATCATGACCA
TATATTAAGTTCGACAGATAAACAAACTAAGTGCTAATCATGGTCCAAAA
GCAGAAGTAAATTTCAACATGGTCCACATAAGTAAAACTAGAACAAACGA
ATCGTTGCAATCACATTCCAACCCTTACAGAAGAAGACAACTGCTAGAGA
AGACACATAACTTGCTTTAATGGAAAATTATTGTTGTCGGACCTCAACTT
TCTTCTTTTGCCAAAGCCTGTCAATGGCGCTGTCACCGTCACCCTGAGCA
CGGACGAAGCCGCAGAGAGCGAAAGTGGAGAATTGGCCAGTGTAAATGCC
ATCAGCATCAACGTGCCCGATGTTGATCTGGACAGCGGCGTGATCCTTGG
AGGTGATGAGCCTGTTTGTGGCGGAACACTTCCTGGGGATATAGAGATCC
ATGTTTTGACCCTCCTCGTTCTGCATCTTGGCTGAGTTTTTTTCTTTCTT
CTTTTTTTTCCTTCTTCTTCCTTTTGACGGCCGGAAATACTAGCCT
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