CN185850

Overview
NameCN185850
Unique NameCN185850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.558e-18
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 2
Query:   53 GYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAWVS 208
            GY APE + +GQ +LKSD+YSFGVV+LE+L+GRK  D++++ +EQSLV W +
Sbjct:  582 GYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWAT 633          

HSP 2 Score: 43.8986 bits (102), Expect = 1.558e-18
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTALAYLASQ 501
            L  W A P   D    + + DP L+G YP +   +   V A+CV  +P+ RP +++VV AL  L  +
Sbjct:  628 LVRW-ATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQR 693          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.026e-18
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 2
Query:   53 GYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAWVS 208
            GY APE + +GQ +LKSDVYSFGVV+LE+L+GRK  D++++ +EQSLV W +
Sbjct:  585 GYSAPETSMSGQYSLKSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWAT 636          

HSP 2 Score: 43.5134 bits (101), Expect = 2.026e-18
Identity = 23/67 (34.33%), Postives = 34/67 (50.75%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTALAYLASQ 501
            L  W A P   D      + DP L+G YP +   +   V A+CV  +P+ RP +++VV AL  L  +
Sbjct:  631 LVRW-ATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQR 696          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.998e-16
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAWV 205
            R++GTYGY APEY  TG L +KSDV++FGVVLLEI++G  A +T +   ++SLV W+
Sbjct:  254 RIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWL 310          

HSP 2 Score: 33.8834 bits (76), Expect = 2.998e-16
Identity = 24/107 (22.43%), Postives = 42/107 (39.25%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTALAYLASQKYESDAEKVQSPCLDPGTPTRTKRDKERKLNGGRGSERER 621
            L  W  RP   ++ R   I D  ++GQY  +   +   +   C+   P  RP + +VV  L ++       +    +         +R+     R   G  G+ER+R
Sbjct:  306 LVDW-LRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVLEHIQGLNVVPNRSSTKQAV---ANSSRSSPHHYRYKAGALGAERKR 408          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 8.452e-16
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 2
Query:   53 GYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAWVS 208
            GY APE       T KSDVYSFGVV+LE+L+GR   D  K   E+SLV W +
Sbjct:  567 GYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWAT 618          

HSP 2 Score: 48.9062 bits (115), Expect = 8.452e-16
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTALAYL---ASQKYESD 516
            L  W A P   D    S IADP L G YPP+   +   + A+CV  +P+ RP +++VV AL  +   +S K + D
Sbjct:  613 LVRW-ATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALVRMVQRSSMKLKDD 686          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW 202
            R++GTYGY APEY  TG LT KSDVYS+GVVLLE+LSGR+AVD ++   EQ LV W
Sbjct:  240 RIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEW 295          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW 202
            RV+GT+GY APEY  TG LT KSDVYSFGVVLLE+LSGR+AVD ++ + E++LV W
Sbjct:  239 RVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEW 294          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 6.855e-15
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW 202
            +++  YGY APE+ + G  T+K DVYSFGVV+LE+L+GRK+ D  +   EQ LV W
Sbjct:  642 QLLAAYGYGAPEF-EYGIYTMKCDVYSFGVVMLELLTGRKSYDKKRDRGEQFLVRW 696          

HSP 2 Score: 40.4318 bits (93), Expect = 6.855e-15
Identity = 20/69 (28.99%), Postives = 36/69 (52.17%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTALAYLASQKY 507
            L  W A P   D    + + DP L+G YP +       V + CV  +P+ RP++++VV  L+ +  +++
Sbjct:  693 LVRW-AIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRCVQSEPEYRPLMSEVVQDLSDMIQREH 760          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW----VSSRNKA--PVDSELRRYFE 256
            RV+GT+GY APEY  TG L  +SDVYSFGVVLLE+L GR+A+D ++ A EQ+LV W    ++SR K    VD+ L   ++
Sbjct:  233 RVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYK 312          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.537e-14
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW 202
            +++  YGY APE+  +G  T +SDVYSFGVV+LE+L+GR + D  ++  EQ LV W
Sbjct:  649 QLLAAYGYGAPEF-DSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRW 703          

HSP 2 Score: 40.4318 bits (93), Expect = 2.537e-14
Identity = 20/61 (32.79%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  301 LTSWQARPLFQDRTRHSLIADPELQGQYPPRGFYQALAVAAMCVHEQPDMRPVIADVVTAL 483
            L  W A P   D      + DP L GQYP +       + + CV  +P+ RP++++VV  L
Sbjct:  700 LVRW-AIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDL 759          
BLAST of CN185850 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   35 RVIGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLEILSGRKAVDTSKAAAEQSLVAW 202
            RV+GTYGY APEY  +G L  +SDVYSFGV+LLEILSG++A+D ++ A E++LV W
Sbjct:  238 RVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDW 293          
The following BLAST results are available for this feature:
BLAST of CN185850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SRF6_ARATH1.558e-1857.69Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH2.026e-1859.62Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
CX32_ARATH2.998e-1656.14Probable serine/threonine-protein kinase Cx32, chl... [more]
SRF5_ARATH8.452e-1653.85Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
APK1B_ARATH1.023e-1567.86Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH2.280e-1567.86Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
SRF1_ARATH6.855e-1551.79Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y3545_ARATH1.930e-1452.50Probable receptor-like protein kinase At3g55450 OS... [more]
SRF3_ARATH2.537e-1450.00Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
BIK1_ARATH5.615e-1462.50Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185850 ID=CN185850; Name=CN185850; organism=Citrus sinensis; type=EST; length=773bp
CTTGGTCCTGTTGGTGAAACACCCATGTATCTACAGGGTCATTGGAACTT
ATGGATACTGTGCTCCAGAGTATGCAAAGACAGGCCAACTGACTTTAAAA
TCAGATGTGTATAGCTTTGGGGTTGTTCTTCTGGAAATCCTTTCAGGCAG
GAAAGCAGTTGACACTTCAAAAGCTGCAGCAGAGCAGAGTCTGGTTGCAT
GGGTAAGCAGCAGAAATAAAGCACCTGTTGACTCGGAACTAAGAAGATAT
TTTGAAAAGAGTACTGAGTTTATATAACTTATGCAAATGTTACATTAATC
TTGACTTCATGGCAGGCAAGACCACTGTTCCAAGACCGAACAAGACACTC
ACTCATTGCTGATCCAGAGCTTCAAGGTCAATATCCTCCTAGGGGCTTCT
ATCAAGCTCTTGCTGTTGCAGCAATGTGTGTCCATGAGCAGCCTGATATG
CGACCGGTCATTGCTGATGTGGTCACTGCCTTGGCTTACCTTGCTTCTCA
AAAGTATGAATCTGACGCAGAGAAGGTCCAAAGCCCTTGCCTGGACCCTG
GTACTCCTACTAGAACGAAGAGGGACAAAGAAAGGAAGCTCAACGGTGGT
CGTGGATCTGAAAGAGAGCGAACCAGAAAACTAAAATGAAATTACCCAGT
GTTTGCTACAAGTTGCTTGCACTTCTGGTACGGATCAGGCTTCTCTCATG
CAAGCCAGCCATAGAAACTGCTTAGTGAAGATCGGGAAAATGCTCTGATG
CCAACATTACGATTGTGGTTTTC
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