CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.674e-64
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  PV Q  G C
Sbjct:   46 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.016e-63
Identity = 121/160 (75.62%), Postives = 135/160 (84.38%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN-QKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT  KVV + TAK +AD++GIPF+ETSAK+ATNVEQAFM MAA IKNRM    A+++++P        PV+  K GCC
Sbjct:   46 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.242e-61
Identity = 121/159 (76.10%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV Q  G C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.767e-61
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV   SG C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKSASGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.767e-61
Identity = 120/159 (75.47%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +G+PF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV   SG C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPASGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.165e-61
Identity = 120/159 (75.47%), Postives = 128/159 (80.50%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.165e-61
Identity = 120/159 (75.47%), Postives = 128/159 (80.50%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.373e-60
Identity = 120/159 (75.47%), Postives = 128/159 (80.50%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQER RTITSSYYRGAHGIIVVYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV Q  G C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.794e-60
Identity = 119/159 (74.84%), Postives = 128/159 (80.50%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ES+ NVKQWL EIDRYASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM    AS   R P ++I   PV    G C
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.060e-60
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYD T+ ESFNNVKQWL+EIDRYA+E+V KLL+GNK D+  +KVVS ET +A ADE+GIPF+ETSAK + NVEQAF+ +A  IK +M SQ  A+  + P TVQ++GQP+ Q +G C
Sbjct:   43 VDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_PIG2.674e-6476.10Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST1.016e-6375.63Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1B_BOVIN1.242e-6176.10Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_RAT2.767e-6174.84Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE2.767e-6175.47Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_PONAB6.165e-6175.47Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN6.165e-6175.47Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_PIG1.373e-6075.47Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_MACFA1.794e-6074.84Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RABD1_ARATH3.060e-6070.00Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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