CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 116/159 (72.96%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL+EIDRYA ENVNKLLVGNK DLTA +VVS + AK FA+ +GI F+ETSAK+A NVE+AFM MAA IK RMA+ P +  A       +  P N  S CC
Sbjct:   43 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKAGVKLTPGQQVPSNGGSKCC 201          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.383e-59
Identity = 114/160 (71.25%), Postives = 129/160 (80.62%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-ASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT++ +GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL A KVV + TAKAFAD + IPF+ETSAK +TNVEQAFM MA  IKNR+ ASQP     +   V     P++ KSGCC
Sbjct:   43 VDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.771e-59
Identity = 113/161 (70.19%), Postives = 126/161 (78.26%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCC 775
            VDFKIRT++ DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+T  KVV Y  AK FAD +GIPF+ETSAK+A+NVEQAF+ MA  IK RM S  A+NN +       G  V  N   GCC
Sbjct:   43 VDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.864e-58
Identity = 109/166 (65.66%), Postives = 135/166 (81.33%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQK----SGCCST 775
            VDFKIRTV+ +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL  N+ V    A+A+A E+GIPF+ETSAK + NVE+AF+AM+A+IK   A   A+   +P   VQ++G+P+ Q+    S CCST
Sbjct:   43 VDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 8.333e-58
Identity = 114/159 (71.70%), Postives = 126/159 (79.25%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKI+T++ DGKTIKLQIWDTAGQERF TITSSYYRGAHG +VVYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK +M    AS   R P ++I   PV    G C
Sbjct:   43 VDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.330e-55
Identity = 108/160 (67.50%), Postives = 125/160 (78.12%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 775
            VDFKIRT + +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+   KVV Y  AK FAD + IPF+ETSAK +TNVEQAF+ M+  IK RM +   AS+NA+      +G  V+Q S  C
Sbjct:   43 VDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = -1
Query:  305 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 775
            VDFKI+T++ DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL   KVV    AK+FA+  GIPF+ETSAK+ATNVE+ F++MA  IKNR+A        +P  V I+ +   +  G
Sbjct:   45 VDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSKNKTKSGG 199          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 4.006e-52
Identity = 103/164 (62.80%), Postives = 121/164 (73.78%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP----TVQIRGQPV-NQKSGCC 775
            VDFKI+TV+ DGKT+KLQIWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  +   +       V ++GQ + N   GCC
Sbjct:   43 VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.832e-52
Identity = 103/161 (63.98%), Postives = 121/161 (75.16%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA--RPPTVQIRG-QPVNQKSGC 775
            VDFKIRT++ DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL   K+V   TA+ +AD +GIPF+ETSAKS+ NVEQAFM MA+ IK        +NN+      V+  G  P+ +K  C
Sbjct:   43 VDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.618e-47
Identity = 89/162 (54.94%), Postives = 121/162 (74.69%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ---IRGQPVNQKSGCC 775
            +DFKIRT++ +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+   KVV     K+ ADE GI F+ETSAK++ NVE+AF+++A  IK RM   P   N +P  VQ     G   N+K  CC
Sbjct:   50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_PHYIN1.519e-5972.96Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1A_DICDI3.383e-5971.25Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPT1_NEUCR5.771e-5970.19GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPTM1_MAIZE2.864e-5865.66GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1C_HUMAN8.333e-5871.70Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_SCHPO1.330e-5567.50GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1D_DICDI2.348e-5265.61Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPT1_YEAST4.006e-5262.80GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1B_DICDI6.832e-5263.98Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8A_DICDI6.618e-4754.94Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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