CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = -1
Query:  386 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 769
            +KIR +  D +   L I DTAGQ  F  +   Y R   G I+ Y +TD+ SF+ V+++   I R   +++   +LVGNK DL   + V+ E   A A E   PF ETSA     ++  F A+   I+ +
Sbjct:   58 YKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRK 185          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  416 TVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 757
            T   DG+TI +  WDTAGQERF+++ +SYY  AH  I+V+DV  + ++ N+  W  E+  +  E +  ++V NK D       S+  AK F+    +P    SA   TNV + F
Sbjct:   62 TATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLF 170          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  386 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 760
            + V+ D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  386 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 760
            + V+ D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  386 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 760
            + V+ D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  386 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 760
            + V+ D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = -1
Query:  314 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK-NRMASQPASNNARPPTVQIRGQPVNQ 733
            IK  +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV +      F  +  + + + SAKS  N E+ F+ +A  +  N      AS    PP VQ+  Q + Q
Sbjct:   56 IKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQ 193          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = -1
Query:  314 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK-NRMASQPASNNARPPTVQIRGQPVNQ 733
            IK  +WDTAGQE+F  +   YY  A   I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+   KV +      F  +  + + + SAKS  N E+ F+ +A  +  N      AS    PP VQ+  Q + Q
Sbjct:   56 IKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQ 193          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 43/127 (33.86%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  386 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 760
            + V+ D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.787e-13
Identity = 45/157 (28.66%), Postives = 70/157 (44.59%), Query Frame = -1
Query:  299 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPAS-------NNARPPTVQIRGQPVNQKSGCC 745
            D +   L + DTAGQE +  +   Y R   G ++VY +T + SF  +  +  +I R   ++   ++V  NKCDL   + V     +  A   G  F+ETSAK   NV+QAF  +   I+     Q  +           PP       P ++ +G C
Sbjct:   54 DDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIRKYNKEQQTTGRMMTGGGGGGPPGTYAGKDPNDEGAGGC 210          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIT1_HUMAN2.806e-1334.88GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RBL2B_HUMAN2.806e-1336.84Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RAP1A_RAT2.806e-1334.65Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE2.806e-1334.65Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN2.806e-1334.65Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN2.806e-1334.65Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
GSP1_CANGA2.806e-1334.04GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
GSP1_ASHGO2.806e-1334.04GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RAP1B_RAT3.665e-1333.86Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAS_LENED4.787e-1328.66Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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