CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.131e-38
Identity = 82/159 (51.57%), Postives = 111/159 (69.81%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMAS-QPASNNARPPTVQIRGQPVNQKSGC 775
            VDFKI+TV  +GK IKLQIWDTAGQERFR   +S YRG H ++VVYDVTDQ SF NV +W+ EI+RYA +NV K+++GNK D+ + KVV    A+ FAD + I F ETSAK A N+E AF+++     +R+   +P+S ++   +  I  +P +QKS C
Sbjct:   43 VDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSS---STIILKKPQSQKSNC 198          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.292e-38
Identity = 81/148 (54.73%), Postives = 112/148 (75.68%), Query Frame = -1
Query:  335 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQI 775
            VDFKI+TV  D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL  ++VV  + AK  A++  + ++E SAK+ +NVE+AF  +A ++K+++   P  +NA   TV +
Sbjct:   42 VDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPTSTVNL 187          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 78/162 (48.15%), Postives = 111/162 (68.52%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP--ASNNARPPTVQIR-GQPVNQKSGCC 775
            +DFKI+TVD +GK +KLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I+ ++ S       N +   + I  G   + KS CC
Sbjct:   55 IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 79/160 (49.38%), Postives = 107/160 (66.88%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 79/160 (49.38%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK   N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.134e-37
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +D KI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N     +   G     KS CC
Sbjct:   44 IDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.754e-37
Identity = 76/162 (46.91%), Postives = 108/162 (66.67%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 775
            +D + + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PFMETSAK+  NVE AF+A+A  +K R   QP       P+ QIR    +QK  S CCS
Sbjct:   65 IDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPDE-----PSFQIRDYVESQKKRSSCCS 221          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 6.208e-37
Identity = 75/162 (46.30%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 775
            +DF+ + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PF+ETSAK+  NVE AF+A+A  +K R     A + A  P+ QIR    +QK  S CCS
Sbjct:   65 IDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYR-----AGHQADEPSFQIRDYVESQKKRSSCCS 221          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABA_DICDI1.131e-3851.57Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB1_THEAN3.292e-3854.73Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
SEC4_YEAST7.334e-3848.15Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB10_PONAB7.334e-3849.38Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE7.334e-3849.38Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN7.334e-3849.38Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.634e-3749.38Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK2.134e-3748.75Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB37_MOUSE4.754e-3746.91Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB37_HUMAN6.208e-3746.30Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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