CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.806e-36
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  353 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 775
            +DF+ + +D DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSAKS  NV+ AF A+A  +K R    P+    R
Sbjct:  100 IDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFR 240          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36
Identity = 75/168 (44.64%), Postives = 111/168 (66.07%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNN--ARPPTVQIRGQPVNQKSGCCST 775
            V+F  RT+  +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS E  +A A++ G+ F+ETSA  A N+E+AF  +   I     K  +A+Q AS+N   +  T+ +     NQ+  CCST
Sbjct:   47 VEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRRSCCST 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36
Identity = 68/141 (48.23%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  353 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 775
            +DF+ + +D DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSA++  NV+ AF A+A  +K R A  P+    R
Sbjct:  103 IDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFR 243          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.081e-36
Identity = 73/142 (51.41%), Postives = 100/142 (70.42%), Query Frame = -1
Query:  350 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 775
            ++FKI+TV  +GK IKLQIWDTAG++RFR + +S+YRG HG+I+VYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL + KVV    A+ FAD + IPF E SAK + N+E+AF+++     NR+          P
Sbjct:   42 IEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRIEETSLKKTQSP 182          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.965e-36
Identity = 68/130 (52.31%), Postives = 94/130 (72.31%), Query Frame = -1
Query:  386 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 775
            +DFKIRT++  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD   N+ VS E  +  A ++ +PF+E SAKS  NV+  F  +A+ I+ +
Sbjct:   49 IDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.965e-36
Identity = 70/127 (55.12%), Postives = 95/127 (74.80%), Query Frame = -1
Query:  395 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +A  I
Sbjct:   44 IDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.171e-35
Identity = 75/170 (44.12%), Postives = 110/170 (64.71%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 775
            V+F  RT+  +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+ F+ETSA  ATN+E+AF  +   I     K  +A+Q A+  A  P    T+ +     N K GCCST
Sbjct:   47 VEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.529e-35
Identity = 76/160 (47.50%), Postives = 105/160 (65.62%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKI+TV+  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID++A+E+V ++L+ NKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +   I +     +P S N     +   G     KS CC
Sbjct:   44 IDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.997e-35
Identity = 74/167 (44.31%), Postives = 108/167 (64.67%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQ---------PVNQKSGC 775
            +DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+ + +VVS +  +  AD++G+ F ETSAK   NV+  F  +   I ++M    A +  + P  Q +GQ         P  Q+  C
Sbjct:   57 IDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKM----AESLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.449e-35
Identity = 65/132 (49.24%), Postives = 98/132 (74.24%), Query Frame = -1
Query:  380 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 775
            +DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+   +V+S+E  +  AD++G+ F ETSAK   NV+  F  +   I ++M+
Sbjct:   56 IDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMS 187          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_RAT1.806e-3648.94Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RB2BV_BETVU2.359e-3644.64Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB26_MOUSE2.359e-3648.23Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RABF1_DICDI3.081e-3651.41Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
SEC4_CANAL8.965e-3652.31Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB10_DISOM8.965e-3655.12Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB11C_LOTJA1.171e-3544.12Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB10_RAT1.529e-3547.50Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB3_CAEEL1.997e-3544.31Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3_DROME4.449e-3549.24Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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